Repository ctat_discasm
Name: ctat_discasm
Owner: trinity_ctat
Synopsis: DISCASM extracts reads that map to reference genomes in a discordant fashion and performs a de novo transcriptome assembly of these reads
DISCASM aims to extract reads that map to reference genomes in a discordant fashion and optionally include reads that do not map to the genome at all, and perform a de novo transcriptome assembly of these reads. DISCASM relies on the output from STAR (as run via STAR-Fusion), and supports de novo transcriptome assembly using Trinity or Oases. - https://github.com/DISCASM/DISCASM/wiki
Content homepage: https://github.com/NCIP/Trinity_CTAT_galaxy/wiki
Development repository: https://github.com/NCIP/Trinity_CTAT_galaxy
Link to this repository: https://toolshed.g2.bx.psu.edu/view/trinity_ctat/ctat_discasm/a772e555b5a1
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/trinity_ctat/ctat_discasm
Type: unrestricted
Revision: 0:a772e555b5a1
This revision can be installed: True
Times cloned / installed: 176

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Discordant and Unmapped Read De novo Transcriptome Assembly 1.0.0 17.05

Categories
Assembly - Tools for working with assemblies
RNA - Utilities for RNA
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis