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Repository cummerbund
Name: cummerbund
Owner: jjohnson
Synopsis: cummeRbund cuffdiff output analysis
Allows for persistent storage, access, exploration, and manipulation of Cufflinks high-throughput sequencing data. In addition, provides numerous plotting functions for commonly used visualizations.
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/jjohnson/cummerbund/ebb9a992508d
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/jjohnson/cummerbund
Type: unrestricted
Revision: 1:ebb9a992508d
This revision can be installed: True
Times cloned / installed: 1389

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
history datasets from Cuffdiff output 0.0.6 any
MultiDimensional Scaling (MDS) plot from cuffdiff read_group_tracking 1.0 any
Create CummeRbund database 0.0.5 any
R package designed to aid and simplify the task of analyzing Cufflinks RNA-Seq output 0.0.6 any
find significant changes in transcript expression, splicing, and promoter use 0.0.6 any

Categories
Next Gen Mappers - Tools for the analysis and handling of Next Gen sequencing data
Visualization - Tools for visualizing data