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Repository bwameth
Name: bwameth
Owner: iuc
Synopsis: Fast and accurate alignment of BS-seq reads
A fast and accurate aligner of bisulfite sequencing (BS-Seq) data.

- Supports single-end and paired-end alignments
- Supports gapped alignments
- Faster and more sensitive than many other tools
Content homepage: https://github.com/brentp/bwa-meth
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/bwameth
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/bwameth/f7094efef903
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/bwameth
Type: unrestricted
Revision: 0:f7094efef903
This revision can be installed: True
Times cloned / installed: 1487
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_bwa_0_7_12 revision 6af9b24ddeee owned by iuc
Repository package_samtools_1_2 revision f6ae3ba3f3c1 owned by iuc
Repository package_python_2_7_toolshed_0_4_6 revision 0aed6209b0d7 owned by iuc
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_readline_6_3 revision ca1a9400d4e1 owned by iuc (prior install required)
Repository package_bzlib_1_0 revision af4887e1f595 owned by iuc (prior install required)
Repository package_xz_5_0_5 revision 944f93d45594 owned by iuc (prior install required)
Repository package_sqlite_3_8_3 revision c8a5c11cc921 owned by iuc (prior install required)
Repository package_gdbm_1_11 revision ed2537bccffc owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_libtool_2_4 revision 7f67694b167c owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
bwameth 0.2.0 package
samtools 1.2 package

Contents of this repository

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Name Description Version Minimum Galaxy Version
Fast and accurate aligner of BS-Seq reads. 0.2.0 any

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Next Gen Mappers - Tools for the analysis and handling of Next Gen sequencing data