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Repository dropletutils_empty_drops
Name: dropletutils_empty_drops
Owner: ebi-gxa
Synopsis: Wrapper for the DropletUtils tool suite: DropletUtils emptyDrops
DropletUtils provides a number of utility functions for handling single-cell (RNA-seq) data from droplet technologies such as 10X Genomics. This includes data loading, identification of cells from empty droplets, removal of barcode-swapped pseudo-cells, and downsampling of the count matrix.
Development repository: https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/
Link to this repository: https://toolshed.g2.bx.psu.edu/view/ebi-gxa/dropletutils_empty_drops/fa662ca7ae7f
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/ebi-gxa/dropletutils_empty_drops
Type: unrestricted
Revision: 4:fa662ca7ae7f
This revision can be installed: True
Times cloned / installed: 436

Contents of this repository

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Name Description Version Minimum Galaxy Version
Distinguish between droplets containing cells and ambient RNA in a droplet-based single-cell RNA sequencing experiment. 1.0.4+galaxy0 16.01

Categories
Transcriptomics - Tools for use in the study of Transcriptomics.
RNA - Utilities for RNA
Statistics - Tools for generating statistics
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis