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Repository lofreq_viterbi
Owner: iuc
Synopsis: Realign reads with LoFreq in Galaxy.
LoFreq is a fast and sensitive variant-caller for inferring SNVs and indels
from next-generation sequencing data. It makes full use of base-call qualities
and other sources of errors inherent in sequencing (e.g. mapping or base/indel
alignment uncertainty), which are usually ignored by other methods or only
used for filtering.
Content homepage: https://csb5.github.io/lofreq/
Type: unrestricted
Revision: 5:aa35ee7f3ab2
This revision can be installed: True
Times cloned / installed: 3194

Contents of this repository

Name Description Version Minimum Galaxy Version
with LoFreq viterbi 2.1.5+galaxy0 18.01

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA