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Repository bwameth
Name: bwameth
Owner: iuc
Synopsis: Fast and accurate alignment of BS-seq reads
A fast and accurate aligner of bisulfite sequencing (BS-Seq) data.

- Supports single-end and paired-end alignments
- Supports gapped alignments
- Faster and more sensitive than many other tools
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/bwameth
Type: unrestricted
Revision: 0:f7094efef903
This revision can be installed: True
Times cloned / installed: 1179
Dependencies of this repository

Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_bwa_0_7_12 revision 6af9b24ddeee owned by iuc
Repository package_samtools_1_2 revision f6ae3ba3f3c1 owned by iuc
Repository package_python_2_7_toolshed_0_4_6 revision 0aed6209b0d7 owned by iuc
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_readline_6_3 revision ca1a9400d4e1 owned by iuc (prior install required)
Repository package_bzlib_1_0 revision af4887e1f595 owned by iuc (prior install required)
Repository package_xz_5_0_5 revision 944f93d45594 owned by iuc (prior install required)
Repository package_sqlite_3_8_3 revision c8a5c11cc921 owned by iuc (prior install required)
Repository package_gdbm_1_11 revision ed2537bccffc owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_libtool_2_4 revision 7f67694b167c owned by iuc (prior install required)

Name Version Type
bwameth 0.2.0 package
samtools 1.2 package

Contents of this repository

Name Description Version Minimum Galaxy Version
Fast and accurate aligner of BS-Seq reads. 0.2.0 any

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Next Gen Mappers - Tools for the analysis and handling of Next Gen sequencing data