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Repository mummer
Name: mummer
Owner: peterjc
Synopsis: Draw dotplots using mummer, mucmer, or promer with mummerplot
A simple wrapper allowing MUMmer to be used to draw dotplots from within Galaxy.

This offers alignment with mummer, mucmer, or promer which is then drawn with
mummerplot giving PNG and PDF as output.
Content homepage: http://mummer.sourceforge.net/
Development repository: https://github.com/peterjc/pico_galaxy/tree/master/tools/mummer
Link to this repository: https://toolshed.g2.bx.psu.edu/view/peterjc/mummer/d9f3d4779507
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/peterjc/mummer
Type: unrestricted
Revision: 6:d9f3d4779507
This revision can be installed: True
Times cloned / installed: 2222
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_libgd_2_1 revision 9ff7903354f2 owned by iuc (prior install required)
Repository package_cairo_1_12_14 revision cd2ed5717e38 owned by devteam (prior install required)
Repository package_readline_6_2 revision 5313ca2fbce6 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 3de32cd300a9 owned by devteam (prior install required)
Repository package_pixman_0_32_4 revision 93cd8e03820c owned by devteam (prior install required)
Repository package_libpng_1_6_7 revision 3de32cd300a9 owned by devteam (prior install required)
Repository package_freetype_2_5_2 revision a65217367e4a owned by devteam (prior install required)
Repository package_fontconfig_2_11_1 revision d88d844df0cb owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 3de32cd300a9 owned by devteam (prior install required)
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 3de32cd300a9 owned by devteam (prior install required)
Repository package_freetype_2_5_2 revision 1e86d1cf79a4 owned by iuc (prior install required)
Repository package_libxml2_2_9_1 revision 45b16a3ab504 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_mummer_3_23 revision 9ddc606546c3 owned by iuc
Repository package_ghostscript_9_10 revision a285e78179bd owned by devteam

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
ghostscript 9.10 package
gnuplot 4.6 package
mummer 3.23 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Combine mummer/nucmer/promer with mummerplot 0.0.7 any

Categories
Graphics - Tools producing images
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Visualization - Tools for visualizing data