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Repository gatk4_mutect2
Name: gatk4_mutect2
Owner: iuc
Synopsis: Wrapper for GATK4 tool: GATK4 Mutect2
Wrappers for GATK4 tools including Mutect2, HaplotypeCaller, and RNA-seq variant calling utilities.
GATK is the industry standard for identifying SNPs and indels in germline DNA and RNAseq data.
Content homepage: https://github.com/broadinstitute/gatk
Development repository: https://github.com/galaxyproject/tools-iuc/tree/main/tools/gatk4
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/gatk4_mutect2/287c4af133e6
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/gatk4_mutect2
Type: unrestricted
Revision: 3:287c4af133e6
This revision can be installed: True
Times cloned / installed: 856

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
- Call somatic SNVs and indels via local assembly of haplotypes 4.1.7.0+galaxy02 18.05

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis