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Repository gatk4_mutect2
Name: gatk4_mutect2
Owner: iuc
Synopsis: A Galaxy wrapper for Mutect2 from GATK
MuTect2 is a somatic SNP and indel caller that combines the DREAM 
challenge-winning somatic genotyping engine of the original MuTect
with the assembly-based machinery of HaplotypeCaller.
Content homepage: https://software.broadinstitute.org/gatk/gatk4
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/gatk4
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/gatk4_mutect2/3be27a9a7313
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/gatk4_mutect2
Type: unrestricted
Revision: 2:3be27a9a7313
This revision can be installed: True
Times cloned / installed: 667

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
- Call somatic SNVs and indels via local assembly of haplotypes 4.1.4.0+galaxy2 18.05

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA