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Repository cummerbund
Name: cummerbund
Owner: jjohnson
Synopsis: cummeRbund cuffdiff output analysis
Allows for persistent storage, access, exploration, and manipulation of Cufflinks high-throughput sequencing data. In addition, provides numerous plotting functions for commonly used visualizations.
Link to this repository: https://toolshed.g2.bx.psu.edu/view/jjohnson/cummerbund/532a336a14c1
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/jjohnson/cummerbund
Type: unrestricted
Revision: 9:532a336a14c1
This revision can be installed: True
Times cloned / installed: 1309
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_cufflinks_2_1_1 revision a8f40accd7ce owned by devteam

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Name Version Type
cufflinks 2.1.1 package

Contents of this repository

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Name Description Version Minimum Galaxy Version
history datasets from Cuffdiff output 0.0.6 any
MultiDimensional Scaling (MDS) plot from cuffdiff read_group_tracking 1.0 any
Create CummeRbund database 0.0.5 any
R package designed to aid and simplify the task of analyzing Cufflinks RNA-Seq output 0.0.7 any
find significant changes in transcript expression, splicing, and promoter use 0.0.7 any

Categories
Next Gen Mappers - Tools for the analysis and handling of Next Gen sequencing data
Visualization - Tools for visualizing data