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Repository gemini_lof_sieve
Owner: iuc
Synopsis: Wrapper for the gemini tool suite: GEMINI lof_sieve
The intent of GEMINI (GEnome MINIing) is to provide a simple, flexible, and powerful framework for exploring genetic variation for
personal and medical genetics. GEMINI is unique in that it integrates genetic variation (from VCF files) with a wealth of genome
annotations into a unified database framework. Using this integrated database as the analysis framework, we aim to leverage the
expressive power of SQL for data analysis, while attempting to overcome the fundamental challenges associated with using databases for
very large (e.g. 1,000,000 variants times 1,000 samples yields one billion genotypes) datasets. In addition, by defining sample
relationships with a PED file, GEMINI allows one to explore and test for variants that meet specific inheritance models (e.g.,
recessive, dominant, etc.).
Type: unrestricted
Revision: 8:4b5123d51e8c
This revision can be installed: True
Times cloned / installed: 970

Contents of this repository

Name Description Version Minimum Galaxy Version
Filter LoF variants by transcript position and type 0.20.1 16.01

Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Next Gen Mappers - Tools for the analysis and handling of Next Gen sequencing data