Repository ctat_metagenomics
Name: ctat_metagenomics
Owner: trinity_ctat
Synopsis: Classifier for metagenomic sequences (RNA-Seq)
Classifier for metagenomic sequences (RNA-Seq). For foreign transcript detection, we leverage Centrifuge and Kraken, leveraging RNA-Seq reads and Trinity-reconstructed transcripts. Our efforts here are being carried out in collaboration with the group of Steven Salzberg at JHU.
Content homepage: https://github.com/NCIP/Trinity_CTAT_galaxy/wiki
Development repository: https://github.com/NCIP/Trinity_CTAT_galaxy
Link to this repository: https://toolshed.g2.bx.psu.edu/view/trinity_ctat/ctat_metagenomics/f92fcdde48fc
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/trinity_ctat/ctat_metagenomics
Type: unrestricted
Revision: 0:f92fcdde48fc
This revision can be installed: True
Times cloned / installed: 337

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Centrifuge classifier for metagenomic sequences (RNA-Seq) 1.0.0 17.05

Categories
Assembly - Tools for working with assemblies
RNA - Utilities for RNA
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis