| Plant small RNA analysis toolkit, microRNA identification and quantification, multiple distinct small RNAs identification, small interacting RNAs identification and quantification. |
hg clone https://toolshed.g2.bx.psu.edu/repos/bigrna/gpsrna
| Name | Version | Type | |
|---|---|---|---|
| Boost-Graph | 1.4_001 | package | |
| Parallel-ForkManager | 1.06 | package | |
| R | 3.0.1 | package | |
| SVG | 2.59 | package | |
| ViennaRNA | 2.1.8 | package | |
| bowtie | 0.12.7 | package | |
| fastx_toolkit | 0.0.13 | package | |
| SCRIPT_PATH | set_environment | ||
| threads | 1.96 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| Program for plant microRNA analysis(miRNA only) | 1.0.0 | any | |
| Program for Raw data preprocess analysis, including 3' adapter triming, reads collaping, genome mapping and rfam non-miRNA analysis | 1.0.0 | any | |
| Program for plant microRNA analysis (rawdata preprocess -> genome mapping -> non-coding RNA(exclude miRNAs) annotation -> microRNA analysis) | 1.0.0 | any | |
| Program for plant siRNA analysis (rawdata preprocess -> genome alignment -> non-coding annotate -> siRNA analysis) | 1.0.0 | any | |
| Program for plant siRNA analysis (siRNA only) | 1.0.0 | any | |