Galaxy |

Repository data_manager_bowtie_index_builder

Name: data_manager_bowtie_index_builder

Owner: iuc

Synopsis: Data Manager for building bowtie indexes

Detailed description:

Bowtie is an ultrafast, memory-efficient short read aligner. It
aligns short DNA sequences (reads) to the human genome at a rate of over 25 million
35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to
keep its memory footprint small: typically about 2.2 GB for the human genome (2.9
GB for paired-end).

Content homepage: http://bowtie-bio.sourceforge.net/

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder

Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_bowtie_index_builder/cb157f55b4fd

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/data_manager_bowtie_index_builder

Type: unrestricted

Revision: 6:cb157f55b4fd

This revision can be installed: True

Times cloned / installed: 2660

Repository README files - may contain important installation or license information

Readme files

Builds a bowtie version 1 index from a fasta reference from the tool_data_table_conf all_fasta reference.
It adds an entry to the tool_data_table_conf bowtie_indexes or bowtie_indexes_color reference.

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Bowtie index View tool metadata	builder	1.2.0	16.01
Bowtie Color index View tool metadata	builder	1.2.0	16.01

Data Managers
Name	Version	Data Tables
bowtie_color_space_index_builder	0.0.1	bowtie_indexes_color
bowtie_index_builder	0.0.1	bowtie_indexes

Data Managers

Name

Version

Data Tables

bowtie_color_space_index_builder

0.0.1

bowtie_indexes_color

bowtie_index_builder

0.0.1

bowtie_indexes