| Please use https://toolshed.g2.bx.psu.edu/view/mvdbeek/sra_tools/9f74a22d2060 as this repository is no longer maintained.
The Galaxy tool wrappers contained in this tool shed repository rely on software developed by the NCBI Sequence Read Archive: http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software. Use of SRA Toolkit software herin should comply with the GPL v2 or greater. Copyright (C) 2013 Matthew Shirley This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>. INSTALLATION This software release was designed to run under Linux, MacOSX operating systems on Intel x86-compatible 64 bit architectures. Build Requirements: ar bash make gcc, g++ libxml2 libcurl4 zlib On a debian based Linux OS use: apt-get install build-essential libxml2-dev libcurl4-openssl-dev zlib-dev CONTROLLED-ACCESS DATA Encrypted, controlled-access data is not supported in this version of the SRA Toolkit Galaxy tool shed. |
| Name | Version | Type | |
|---|---|---|---|
| sra_toolkit | 2.4.5 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| in BAM format from NCBI SRA. | 1.1.2 | any | |
| in FASTQ/A format from NCBI SRA. | 1.1.2 | any | |
| in SAM format from NCBI SRA. | 1.1.2 | any | |
| from NCBI sra. | 1.1.1 | any | |
| extension | type | mimetype | subclass |
|---|---|---|---|
| sra | galaxy.datatypes.sra:Sra | application/octet-stream | |