| installs the MiModD suite of tools for the analysis of genome-wide sequencing data from model organisms along with their Galaxy tool wrappers. |
| Name | Version | Type | |
|---|---|---|---|
| R | 3.2.1 | package | |
| mimodd | 0.1.7.3 | package | |
| python3 | 3.4 | package | |
| readline | 6.3 | package | |
| zlib | 1.2.8 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| From a BAM file generate a new file with the original header (if any) replaced or modified by that found in a second SAM file | 0.1.7.3 | any | |
| Predicts deletions in one or more aligned read samples based on coverage of the reference genome and on insert sizes | 0.1.7.3 | any | |
| Sort a BAM file by coordinates (or names) of the mapped reads | 0.1.7.3 | any | |
| Map sequence reads to a reference genome using SNAP | 0.1.7.3 | any | |
| from a BCF file | 0.1.7.3 | any | |
| between different sequence data formats | 0.1.7.3 | any | |
| Map causative mutations by multi-variant linkage analysis. | 0.1.7.3 | any | |
| Create a SAM format header from run metadata for sample annotation. | 0.1.7.3 | any | |
| Extracts lines from a vcf variant file based on field-specific filters | 0.1.7.3 | any | |
| Checks the local SnpEff installation to compile a list of currently installed genomes | 0.1.7.3 | any | |
| Calculate coverage statistics for a BCF file as generated by the Variant Calling tool | 0.1.7.3 | any | |
| for supported data formats. | 0.1.7.3 | any | |
| From a reference and aligned reads generate a BCF file with position-specific variant likelihoods and coverage information | 0.1.7.3 | any | |
| Predict the effects of SNPs and indels on known genes in the reference genome using SnpEff | 0.1.7.3 | any | |