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Repository multiqc
Name: multiqc
Owner: iuc
Synopsis: MultiQC aggregates results from bioinformatics analyses across many samples into a single report
MultiQC searches a given directory for analysis logs and compiles a HTML report. 
It's a general use tool, perfect for summarising the output from numerous bioinformatics tools.
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Repository README files - may contain important installation or license information

Galaxy MultiQC wrapper

Aggregate results from bioinformatics analyses across many samples into a single report

MultiQC searches a given directory for analysis logs and compiles a HTML report. It's a general use tool, perfect for summarising the output from numerous bioinformatics tools.

Prevent displaying MultiQC webpage as gibberish

For Galaxy to display MultiQC's HTML output properly, you need to either:

  1. Deactivate the sanitize_all_html option in galaxy.ini (sanitize_all_html = False), or
  2. Whitelist the tool in "Manage Display Whitelist" after installing

Problems with encodings

If you observe python Runtime errors because python3 is configured to use ASCII then set LC_ALL and LANG in your job_conf.xml. See also

Support new modules

Currently, the wrapper supports the modules for tools found on the MTS. To add new ones, you can look at the patterns at

Contents of this repository

Name Description Version Minimum Galaxy Version
aggregate results from bioinformatics analyses into a single report 1.11+galaxy1 20.01

Fastq Manipulation - Tools for manipulating fastq data
Statistics - Tools for generating statistics
Visualization - Tools for visualizing data