|This tool uses the SAMtools toolkit to remove potential PCR duplicates:
if multiple read pairs have identical external coordinates, only retain the pair
with highest mapping quality. In the paired-end mode, this command ONLY works with
FR orientation and requires ISIZE is correctly set. It does not work for unpaired
reads (e.g. two ends mapped to different chromosomes or orphan reads).
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/samtools_rmdup
|Minimum Galaxy Version
|remove PCR duplicates