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Repository samtools_rmdup
Owner: devteam
Synopsis: Remove PCR duplicates
This tool uses the SAMtools toolkit to remove potential PCR duplicates:
if multiple read pairs have identical external coordinates, only retain the pair
with highest mapping quality. In the paired-end mode, this command ONLY works with
FR orientation and requires ISIZE is correctly set. It does not work for unpaired
reads (e.g. two ends mapped to different chromosomes or orphan reads).
Content homepage:
Type: unrestricted
Revision: 5:586f9e1cdb2b
This revision can be installed: True
Times cloned / installed: 9490

Contents of this repository

Name Description Version Minimum Galaxy Version
remove PCR duplicates 2.0.1 16.01

SAM - Tools for manipulating alignments in the SAM format