Repository taxonomy_sqlite
Name: taxonomy_sqlite
Owner: stheil
Synopsis: Download NCBI taxonomy from FTP and loads it into a sqlite database.
Download 4 files : gi_taxid_prot.dmp, gi_taxid_nucl.dmp, nodes.dmp and names.dmp from NCBI Taxonomy ftp site.
A perl script called loadTaxonomy.pl creates the DB structure and loads the downloaded data into it.
This DB aims to be used by the taxonomy_from_blast tools repository.
Link to this repository: https://toolshed.g2.bx.psu.edu/view/stheil/taxonomy_sqlite/4ecb2ce50254
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/stheil/taxonomy_sqlite
Type: unrestricted
Revision: 0:4ecb2ce50254
This revision can be installed: True
Times cloned / installed: 149
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_gnu_coreutils_8_25 revision a177f177d42f owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
loadTaxonomy 1.0 package
perl 5.18.1 package

Categories
Metagenomics - Tools enabling the study of metagenomes