Repository revision
repository tip
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository deeptools_compute_matrix_operations
Owner: bgruening
Synopsis: Wrapper for the deepTools: computeMatrixOperations
deepTools address the challenge of visualizing the large amounts of data that
are now routinely generated from sequencing centers in a meaningful way. To do so,
deepTools contain useful routines to process the mapped reads data through removal of
duplicates and different filtering options to create coverage files in standard
bedGraph and bigWig file formats. deepTools allow the creation of normalized
coverage files or the comparison between two files (for example, treatment and control).

Finally, using such normalized and standardized files, multiple visualizations can be
created to identify enrichments with functional annotations of the genome.
For a gallery of images that can be produced and a description of the tools see http://f1000.com/posters/browse/summary/1094053

https://github.com/deeptools/deepTools
doi: 10.1093/nar/gku365
Wikipage: https://github.com/deeptools/deepTools/wiki

Repository-Maintainer: Björn Grüning

https://github.com/deeptools/deepTools
Type: unrestricted
Revision: 20:e6d0bff01239
This revision can be installed: True
Times cloned / installed: 2837

Contents of this repository

Name Description Version Minimum Galaxy Version
Modify or combine the output of computeMatrix in a variety of ways. 3.5.4+galaxy0 22.05

Categories
ChIP-seq - Tools for analyzing and manipulating ChIP-seq data.
Convert Formats - Tools for converting data formats
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Visualization - Tools for visualizing data