|deepTools address the challenge of visualizing the large amounts of data that
are now routinely generated from sequencing centers in a meaningful way. To do so,
deepTools contain useful routines to process the mapped reads data through removal of
duplicates and different filtering options to create coverage files in standard
bedGraph and bigWig file formats. deepTools allow the creation of normalized
coverage files or the comparison between two files (for example, treatment and control).
Finally, using such normalized and standardized files, multiple visualizations can be
created to identify enrichments with functional annotations of the genome.
For a gallery of images that can be produced and a description of the tools see http://f1000.com/posters/browse/summary/1094053
Repository-Maintainer: Björn Grüning
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_pe_fragmentsize
|Minimum Galaxy Version
|Estimate the predominant cDNA fragment length from paired-end sequenced BAM/CRAM files