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Repository ctat_mutations
Name: ctat_mutations
Owner: trinity_ctat
Synopsis: Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19
Mutation detection in RNA-Seq highlights the GATK Best Practices in RNA-Seq variant calling, several sources of variant annotation, and filtering based on CRAVAT.
Development repository: https://github.com/NCIP/ctat-mutations
Link to this repository: https://toolshed.g2.bx.psu.edu/view/trinity_ctat/ctat_mutations/b591b35283e4
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/trinity_ctat/ctat_mutations
Type: unrestricted
Revision: 3:b591b35283e4
This revision can be installed: True
Times cloned / installed: 350

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Mutation Pipeline for calling SNPs and variants 1.0.0 17.05

Categories
RNA - Utilities for RNA
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Transcriptomics - Tools for use in the study of Transcriptomics.
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA