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Repository humann2_reduce_table
Owner: iuc
Synopsis: Wrapper for the humann2 tool suite: Reduce
HUMAnN is a pipeline for efficiently and accurately profiling the presence/absence and abundance of microbial pathways 
in a community from metagenomic or metatranscriptomic sequencing data (typically millions of short DNA/RNA reads). 
This process, referred to as functional profiling, aims to describe the metabolic potential of a microbial community 
and its members. More generally, functional profiling answers the question "What are the microbes in my community-of-interest 
doing (or capable of doing)?"
Type: unrestricted
Revision: 6:e0b670a43758
This revision can be installed: True
Times cloned / installed: 1562

Repository README files - may contain important installation or license information

Galaxy wrappers for HUMAnN2

Galaxy should be able to automatically install the dependencies, i.e. the HUMAnN2 binaries and its dependencies.

After installation, you must tell Galaxy about the default databases for MetaPhlAn2 and HUMAnN2. You need to use the data managers for that and installing:

  • MetaPhlAn2 database
  • HUMAnN2 nucleotide database
  • HUMAnN2 protein database
Dependencies of this repository

Repository data_manager_metaphlan2_database_downloader revision 83f07f40b200 owned by iuc
Repository data_manager_humann2_database_downloader revision ff9cf22838d4 owned by iuc

Contents of this repository

Name Description Version Minimum Galaxy Version
a HUMAnN2 generated table 0.11.1.1 16.01

Categories
Metagenomics - Tools enabling the study of metagenomes