| A preprocessing pipeline for single cell RNA-seq data that starts from the fastq files and produces a gene count matrix and a HTML report with associated quality control information. It can process fastq data generated by CEL-seq, MARS-seq, Drop-seq, Chromium 10x and SMART-seq protocols. |
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/scpipe
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| - preprocessing pipeline for single cell RNA-seq | 1.0.0+galaxy2 | 19.01 | |