Repository checkm_plot
Name: checkm_plot
Owner: iuc
Synopsis: Wrapper for the CheckM tool suite: CheckM plot
CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. It provides robust estimates of genome completeness and contamination by using collocated sets of genes that are ubiquitous and single-copy within a phylogenetic lineage. Assessment of genome quality can also be examined using plots depicting key genomic characteristics (e.g., GC, coding density) which highlight sequences outside the expected distributions of a typical genome. CheckM also provides tools for identifying genome bins that are likely candidates for merging based on marker set compatibility, similarity in genomic characteristics, and proximity within a reference genome tree.
Type: unrestricted
Revision: 1:b24e4f6c8b4d
This revision can be installed: True
Times cloned / installed: 108

Contents of this repository

Name Description Version Minimum Galaxy Version
for assessing the quality of genome bins 1.2.0+galaxy0 21.01

Metagenomics - Tools enabling the study of metagenomes