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Repository dimspy_sample_filter
Synopsis: [Metabolomics][DIMS] DIMSpy: Sample Filter Remove peaks that fail to appear in x-out-of-n (biological) samples
[Metabolomics][DIMS] DIMSpy: Tools for processing, filtering and analysing direct-infusion mass spectrometry-based metabolomics and lipidomics data
Type: unrestricted
Revision: 2:cd489cbd4d1c
This revision can be installed: True
Times cloned / installed: 264

Repository README files - may contain important installation or license information

Galaxy tool wrappers for DIMSpy

Build Status (last commit) Build Status (weekly global test) galaxy-eu Git Bioconda License

Galaxy tool wrappers for Python package DIMSpy: data processing of direct-infusion mass spectrometry (DIMS)-based metabolomics and lipidomics data

Source code: https://github.com/computational-metabolomics/dimspy

PyPI (The Python Package Index): https://pypi.org/project/dimspy

Version

v2.0.0+Galaxy0 (DIMSpy v2.0.0)

Galaxy

Galaxy is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.

Credits

Authors and contributors
DIMSpy acknowledges support from the following funders:
  • BBSRC, grant number BB/M019985/1
  • European Commission's H2020 programme, grant agreement number 654241
  • Wellcome Trust, grant number 202952/Z/16/Z

Bugs

Please report any bugs that you find here. Or fork the repository on GitHub and create a pull request (PR). We welcome all contributions, and we will help you to make the PR if you are new to git.

Changes

v2.0.0+galaxy0
  • First release (Python 3-based version DIMSpy)
v1.4.0+galaxy0
  • System Message: WARNING/2 (<string>, line 2); backlink

    Duplicate explicit target name: "dimspy".

    Final release (Python 2-based version DIMSpy)

Licenses

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Licenses
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DIMSpy and Galaxy tools are released under the GNU General Public License v3.0 (see LICENSE file)

Third-party licenses and copyright

RawFileReader reading tool. Copyright © 2016 by Thermo Fisher Scientific, Inc. All rights reserved. See RawFileReaderLicense for licensing information. Using DIMSpy software for processing Thermo Fisher Scientific *.raw files implies the acceptance of the RawFileReader license terms. Anyone receiving RawFileReader as part of a larger software distribution (in the current context, as part of DIMSpy) is considered an "end user" under section 3.3 of the RawFileReader License, and is not granted rights to redistribute RawFileReader.

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Contents of this repository

Name Description Version Minimum Galaxy Version
Remove peaks that fail to appear in x-out-of-n (biological) samples 2.0.0+galaxy0 16.01

Categories
Metabolomics - Tools for use in the study of Metabolomics