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Repository dexseq
Name: dexseq
Owner: iuc
Synopsis: Inference of differential exon usage in RNA-Seq
Estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential
expression based on a model using the negative binomial distribution
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/dexseq
Type: unrestricted
Revision: 0:4ca0e679f21e
This revision can be installed: True
Times cloned / installed: 1848
Dependencies of this repository

Repository package_ez_setup_0_9 revision 10fd2e2a9f2f owned by iuc (prior install required)
Repository package_numpy_1_7 revision 300877695495 owned by iuc (prior install required)
Repository package_matplotlib_1_2 revision 48020985e28c owned by iuc (prior install required)
Repository package_atlas_3_10 revision 98c017ec230d owned by iuc (prior install required)
Repository package_r_3_2_1 revision d9f7d84125b7 owned by iuc (prior install required)
Repository package_cairo_1_14_2 revision 3e7cd6a990f7 owned by iuc (prior install required)
Repository package_tiff_4_0_3 revision 1e6bcf7a8a03 owned by iuc (prior install required)
Repository package_freetype_2_5_2 revision 1e86d1cf79a4 owned by iuc (prior install required)
Repository package_pixman_0_32_6 revision 06f701aa92e2 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_libxml2_2_9_1 revision 45b16a3ab504 owned by iuc (prior install required)
Repository package_libcurl_7_35 revision 0d934b13250c owned by iuc (prior install required)
Repository package_atlas_3_10 revision 98c017ec230d owned by iuc (prior install required)
Repository package_readline_6_3 revision ca1a9400d4e1 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_cairo_1_12_14 revision 0a73735c3161 owned by iuc (prior install required)
Repository package_pixman_0_32_6 revision 06f701aa92e2 owned by iuc (prior install required)
Repository package_freetype_2_5_2 revision 1e86d1cf79a4 owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_fontconfig_2_11_1 revision d88d844df0cb owned by iuc (prior install required)
Repository package_numpy_1_7 revision 300877695495 owned by iuc (prior install required)
Repository package_freetype_2_4 revision b32452aa80dc owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_tiff_4_0_3 revision 1e6bcf7a8a03 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_imaging_1_1_7 revision d5f2627f4cfd owned by iuc (prior install required)
Repository package_pixman_0_32_6 revision 06f701aa92e2 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_freetype_2_5_2 revision 1e86d1cf79a4 owned by iuc (prior install required)
Repository package_fontconfig_2_11_1 revision d88d844df0cb owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_pixman_0_32_4 revision 32ff063c4de8 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_freetype_2_5_2 revision 1e86d1cf79a4 owned by iuc (prior install required)
Repository package_fontconfig_2_11_1 revision d88d844df0cb owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_freetype_2_5_2 revision 1e86d1cf79a4 owned by iuc (prior install required)
Repository package_libxml2_2_9_1 revision 45b16a3ab504 owned by iuc (prior install required)
Repository package_tiff_4_0_3 revision 1e6bcf7a8a03 owned by iuc (prior install required)
Repository package_freetype_2_4 revision b32452aa80dc owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)

Name Version Type
dexseq 1.14 package
htseq 0.6.1 package
pysam 0.7.7 package

Contents of this repository

Name Description Version Minimum Galaxy Version
Determines differential exon usage from count tables 1.0 any
Prepare and count exon abundancies from RNA-seq data 1.0 any

Categories
Transcriptomics - Tools for use in the study of Transcriptomics.
RNA - Utilities for RNA
Statistics - Tools for generating statistics