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Repository dexseq
Name: dexseq
Owner: iuc
Synopsis: Inference of differential exon usage in RNA-Seq
Estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential
expression based on a model using the negative binomial distribution
Content homepage: https://www.bioconductor.org/packages/release/bioc/html/DEXSeq.html
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/dexseq
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/dexseq/4ca0e679f21e
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/dexseq
Type: unrestricted
Revision: 0:4ca0e679f21e
This revision can be installed: True
Times cloned / installed: 1732
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_ez_setup_0_9 revision 10fd2e2a9f2f owned by iuc (prior install required)
Repository package_numpy_1_7 revision 300877695495 owned by iuc (prior install required)
Repository package_matplotlib_1_2 revision 48020985e28c owned by iuc (prior install required)
Repository package_atlas_3_10 revision 98c017ec230d owned by iuc (prior install required)
Repository package_r_3_2_1 revision d9f7d84125b7 owned by iuc (prior install required)
Repository package_cairo_1_14_2 revision 3e7cd6a990f7 owned by iuc (prior install required)
Repository package_tiff_4_0_3 revision 1e6bcf7a8a03 owned by iuc (prior install required)
Repository package_freetype_2_5_2 revision 1e86d1cf79a4 owned by iuc (prior install required)
Repository package_pixman_0_32_6 revision 06f701aa92e2 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_libxml2_2_9_1 revision 45b16a3ab504 owned by iuc (prior install required)
Repository package_libcurl_7_35 revision 0d934b13250c owned by iuc (prior install required)
Repository package_atlas_3_10 revision 98c017ec230d owned by iuc (prior install required)
Repository package_readline_6_3 revision ca1a9400d4e1 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_cairo_1_12_14 revision 0a73735c3161 owned by iuc (prior install required)
Repository package_pixman_0_32_6 revision 06f701aa92e2 owned by iuc (prior install required)
Repository package_freetype_2_5_2 revision 1e86d1cf79a4 owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_fontconfig_2_11_1 revision d88d844df0cb owned by iuc (prior install required)
Repository package_numpy_1_7 revision 300877695495 owned by iuc (prior install required)
Repository package_freetype_2_4 revision b32452aa80dc owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_tiff_4_0_3 revision 1e6bcf7a8a03 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_imaging_1_1_7 revision d5f2627f4cfd owned by iuc (prior install required)
Repository package_pixman_0_32_6 revision 06f701aa92e2 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_freetype_2_5_2 revision 1e86d1cf79a4 owned by iuc (prior install required)
Repository package_fontconfig_2_11_1 revision d88d844df0cb owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_pixman_0_32_4 revision 32ff063c4de8 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_freetype_2_5_2 revision 1e86d1cf79a4 owned by iuc (prior install required)
Repository package_fontconfig_2_11_1 revision d88d844df0cb owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_freetype_2_5_2 revision 1e86d1cf79a4 owned by iuc (prior install required)
Repository package_libxml2_2_9_1 revision 45b16a3ab504 owned by iuc (prior install required)
Repository package_tiff_4_0_3 revision 1e6bcf7a8a03 owned by iuc (prior install required)
Repository package_freetype_2_4 revision b32452aa80dc owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
dexseq 1.14 package
htseq 0.6.1 package
pysam 0.7.7 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Determines differential exon usage from count tables 1.0 any
Prepare and count exon abundancies from RNA-seq data 1.0 any

Categories
Transcriptomics - Tools for use in the study of Transcriptomics.
RNA - Utilities for RNA
Statistics - Tools for generating statistics