Repository translate_bed
Name: translate_bed
Owner: galaxyp
Synopsis: Translate BED transcript CDS or cDNA in 3 frames
Translate transcripts from the input BED file into protein sequences.

The genomic sequence may be supplied
in an extra column in the BED input file,
retrieved from a twobit genomic reference file,  
or retrieved from the Ensembl REST API for Ensembl transcripts.
Content homepage: http://rest.ensembl.org/
Development repository: https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteogenomics/translate_bed
Link to this repository: https://toolshed.g2.bx.psu.edu/view/galaxyp/translate_bed/038ecf54cbec
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/translate_bed
Type: unrestricted
Revision: 0:038ecf54cbec
This revision can be installed: True
Times cloned / installed: 421

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
cDNA in 3frames or CDS 0.1.0 16.01

Categories
Proteomics - Tools enabling the study of proteins