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Repository droplet_barcode_plot

Name: droplet_barcode_plot

Owner: ebi-gxa

Synopsis: Make a cell barcode plot for droplet single-cell RNA-seq QC

Detailed description:

Given a barcode freqeuncy table or an MTX-format matrix from which one can be calculated, produces a barcode rank plot to assess distinctness of droplets with cells over those without.

Content homepage: https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary

Development repository: https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/droplet-rank-plot/.shed.yml

Link to this repository: https://toolshed.g2.bx.psu.edu/view/ebi-gxa/droplet_barcode_plot/8f605643ccfd

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/ebi-gxa/droplet_barcode_plot

Type: unrestricted

Revision: 3:8f605643ccfd

This revision can be installed: True

Times cloned / installed: 326

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name	Description	Version	Minimum Galaxy Version
Droplet barcode rank plot View tool metadata	Creates a barcode rank plot for quality control of droplet single-cell RNA-seq data	1.6.1+galaxy2	18.01

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata

Name

Description

Version

Minimum Galaxy Version

View tool metadata

Creates a barcode rank plot for quality control of droplet single-cell RNA-seq data

1.6.1+galaxy2

18.01