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Repository revision

Revision: 26:2889433c7ae1

Repository 'ncbi_blast_plus'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus

NCBI BLAST+ rpstblastn tool metadata

Miscellaneous

Name: NCBI BLAST+ rpstblastn

Description: Search protein domain database (PSSMs) with translated nucleotide query sequence(s)

Id: ncbi_rpstblastn_wrapper

Guid: toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_rpstblastn_wrapper/0.3.3

Version: 0.3.3

Version command string: rpstblastn -version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_rpstblastn_wrapper/0.3.3 (this tool)

toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_rpstblastn_wrapper/0.0.3

ncbi_rpstblastn_wrapper

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

blast

2.7.1

package

Functional tests

name

inputs

outputs

required files

Test-1

db_opts|db_opts_selector: db
query: rhodopsin_nucs.fasta
db_opts|database: cd00003_and_cd00008
output|out_format: 6
evalue_cutoff: 1e-8

attributes: name

rhodopsin_nucs.fasta
name