Repository revision
5:393a7a35383c

Repository 'ncbi_blast_plus'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus

NCBI BLAST+ blastx tool metadata
Miscellaneous
Search protein database with translated nucleotide query sequence(s)
ncbi_blastx_wrapper
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastx_wrapper/0.0.14
0.0.14
blastx -version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastx_wrapper/0.0.15
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastx_wrapper/0.0.14 (this tool)
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastx_wrapper/0.0.13
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastx_wrapper/0.0.12
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastx_wrapper/0.0.11
ncbi_blastx_wrapper
Requirements (dependencies defined in the <requirements> tag set)
name version type
blastx not provided binary
Functional tests
name inputs outputs required files
Test-1 db_opts|db_opts_selector: file
out_format: 5
adv_opts|adv_opts_selector: basic
db_opts|subject: four_human_proteins.fasta
evalue_cutoff: 1e-10
db_opts|database:
query: rhodopsin_nucs.fasta
attributes: name
rhodopsin_nucs.fasta
four_human_proteins.fasta
name
Test-2 db_opts|db_opts_selector: file
out_format: 6
adv_opts|adv_opts_selector: basic
db_opts|subject: four_human_proteins.fasta
evalue_cutoff: 1e-10
db_opts|database:
query: rhodopsin_nucs.fasta
attributes: name
rhodopsin_nucs.fasta
four_human_proteins.fasta
name
Test-3 db_opts|db_opts_selector: file
out_format: ext
adv_opts|adv_opts_selector: basic
db_opts|subject: four_human_proteins.fasta
evalue_cutoff: 1e-10
db_opts|database:
query: rhodopsin_nucs.fasta
attributes: name
rhodopsin_nucs.fasta
four_human_proteins.fasta
name