Repository revision
29:5edc472ec434

Repository 'ncbi_blast_plus'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus

NCBI BLAST+ blastdbcmd entry(s) tool metadata
Miscellaneous
Extract sequence(s) from BLAST database
ncbi_blastdbcmd_wrapper
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastdbcmd_wrapper/2.10.1+galaxy0
2.10.1+galaxy0
blastdbcmd -version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastdbcmd_wrapper/2.10.1+galaxy1
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastdbcmd_wrapper/2.10.1+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastdbcmd_wrapper/0.0.3
ncbi_blastdbcmd_wrapper
Requirements (dependencies defined in the <requirements> tag set)
name version type
blast 2.10.1 package
Functional tests
name inputs outputs required files
Test-1 db_opts|db_origin|database: four_human_proteins
db_opts|db_origin|db_origin_selector: db
db_opts|db_type: prot
id_opts|entries: all
id_opts|id_type: prompt
outfmt: original
name: value
value
Test-2 db_opts|db_origin|database: rhodopsin_nucs
db_opts|db_type: nucl
id_opts|entries: all
id_opts|id_type: prompt
outfmt: original
name: value
value
Test-3 db_opts|db_origin|database: rhodopsin_nucs
db_opts|db_type: nucl
id_opts|entries: rhodopsin_nucs.blastdbcmd.txt
id_opts|id_type: file
outfmt: original
name: value
rhodopsin_nucs.blastdbcmd.txt
value
Test-4 db_opts|db_origin|database: rhodopsin_nucs
db_opts|db_type: nucl
id_opts|entries: U59921.1
id_opts|id_type: prompt
outfmt: original
name: value
value
Test-5 db_opts|db_origin|database: ['rhodopsin_nucs', 'three_human_mRNA']
db_opts|db_type: nucl
id_opts|entries: gi|2734705|gb|U59921.1|BBU59921
id_opts|id_type: prompt
outfmt: original
name: value
value