| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/2.14.1+galaxy2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/2.14.1+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/2.14.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/2.10.1+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/2.10.1+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/2.10.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/2.9.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/2.7.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.3.3 |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.3.1 |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.3.0 |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.2.01 |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.2.00 |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.1.08 |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.1.07 |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/@WRAPPER_VERSION@ |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.1.05 |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.1.01 |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.1.00 |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.0.22 |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.0.11 |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.0.10 |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.0.8 |
| blastxml_to_tabular |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| python | 3.9 | package |
| Additional information about this tool |
python $__tool_directory__/blastxml_to_tabular.py -o '$tabular_file'
#if $output.out_format == "cols":
#set cols = (str($output.std_cols)+","+str($output.ext_cols)).replace("None", " ").replace(",,", ",").replace(",", " ")
-c '$cols'
#else
-c '$output.out_format'
#end if
#for i in $blastxml_file#'${i}' #end for#
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
blastxml_file: blastp_four_human_vs_rhodopsin.xml output|out_format: std |
name: value |
blastp_four_human_vs_rhodopsin.xml value |
| Test-2 |
blastxml_file: blastp_four_human_vs_rhodopsin.xml output|out_format: ext |
name: value |
blastp_four_human_vs_rhodopsin.xml value |
| Test-3 |
blastxml_file: blastp_sample.xml output|out_format: std |
name: value |
blastp_sample.xml value |
| Test-4 |
blastxml_file: blastx_rhodopsin_vs_four_human.xml output|out_format: std |
name: value |
blastx_rhodopsin_vs_four_human.xml value |
| Test-5 |
blastxml_file: blastx_rhodopsin_vs_four_human.xml output|out_format: ext |
name: value |
blastx_rhodopsin_vs_four_human.xml value |
| Test-6 |
blastxml_file: blastx_sample.xml output|out_format: std |
name: value |
blastx_sample.xml value |
| Test-7 |
blastxml_file: blastp_human_vs_pdb_seg_no.xml output|out_format: std |
name: value |
blastp_human_vs_pdb_seg_no.xml value |
| Test-8 |
blastxml_file: blastp_human_vs_pdb_seg_no.xml output|out_format: ext |
name: value |
blastp_human_vs_pdb_seg_no.xml value |
| Test-9 |
blastxml_file: blastn_arabidopsis.xml output|out_format: std |
name: value |
blastn_arabidopsis.xml value |
| Test-10 |
blastxml_file: blastn_arabidopsis.xml output|out_format: ext |
name: value |
blastn_arabidopsis.xml value |
| Test-11 |
blastxml_file: blastn_rhodopsin_vs_three_human.xml output|out_format: std |
name: value |
blastn_rhodopsin_vs_three_human.xml value |
| Test-12 |
blastxml_file: blastn_rhodopsin_vs_three_human.xml output|std_cols: ['qseqid', 'sseqid', 'pident'] output|ext_cols: ['qlen', 'slen'] output|out_format: cols |
name: value |
blastn_rhodopsin_vs_three_human.xml value |