Repository revision
1:ae36fab06bc2

Repository 'samtools_coverage'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/samtools_coverage

Samtools coverage tool metadata
Miscellaneous
computes the depth at each position or region
samtools_coverage
toolshed.g2.bx.psu.edu/repos/iuc/samtools_coverage/samtools_coverage/1.15.1+galaxy0
1.15.1+galaxy0
samtools 2>&1 | grep Version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/samtools_coverage/samtools_coverage/1.15.1+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/samtools_coverage/samtools_coverage/1.15.1+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/samtools_coverage/samtools_coverage/1.13
samtools_coverage
Requirements (dependencies defined in the <requirements> tag set)
name version type
samtools 1.15.1 package
Functional tests
name inputs outputs required files
Test-1 condition_input|input: test_1.bam
name: value
test_1.bam
value
Test-2 condition_input|input: test_1.bam
condition_histogram|n_bins: 50
condition_histogram|histogram_select: yes
name: value
test_1.bam
value
Test-3 condition_input|input: ['test_1.bam', 'test_2.bam']
condition_input|input_pooling: Yes
condition_histogram|n_bins: 100
condition_histogram|histogram_select: yes
name: value
test_1.bam
test_2.bam
value