| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos/0.69.8+galaxy12 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos/0.69.8+galaxy10 |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos/0.69.8+galaxy9 |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos/0.69.8+galaxy8 |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos/0.69.8+galaxy7 |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos/0.69.8+galaxy6 |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos/0.69.8+galaxy1 |
| circos |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| circos | 0.69.8 | package |
| bcbiogff | 0.6.6 | package |
| biopython | 1.79 | package |
| pybigwig | 0.3.18 | package |
| circos-tools | 0.23 | package |
| grep | 3.10 | package |
| tar | 1.34 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
reference_genome|ref|genome_fasta: 1/input.fa reference_genome|ref|ref_source: history outputs|png: True outputs|svg: True |
name: value name: value |
1/input.fa value |
| Test-2 |
reference_genome|ref|genome_fasta: too-many.fa reference_genome|ref|ref_source: history |
too-many.fa |
|
| Test-3 |
reference_genome|ref|genome_fasta: 1/input.fa reference_genome|ref|ref_source: history ideogram|units: kb sec_tdd|data_0|r1: 0.9 sec_tdd|data_0|r0: 0.8 sec_tdd|data_0|plot_format|data_source: 1/sine.tab sec_tdd|data_0|plot_format|plot_format_select: histogram sec_tdd|data_1|r1: 0.8 sec_tdd|data_1|r0: 0.7 sec_tdd|data_1|plot_format|data_source: 1/sine.tab sec_tdd|data_1|plot_format|plot_format_select: scatter sec_tdd|data_2|r1: 0.7 sec_tdd|data_2|r0: 0.6 sec_tdd|data_2|plot_format|data_source: 1/tiles.bed sec_tdd|data_2|plot_format|plot_format_select: tile sec_links|data_0|radius: 0.59 sec_links|data_0|data_source: 1/links.txt sec_links|data_0|linktype|ribbon: yes ticks|tick_group_0|spacing: 1 ticks|tick_group_1|spacing: 5 ticks|tick_group_1|ticks|format: %.1f ticks|tick_group_1|ticks|show_tick_labels: yes outputs|svg: True |
name: value name: value |
1/input.fa 1/sine.tab 1/tiles.bed 1/links.txt value |
| Test-4 |
reference_genome|ref|genome_fasta: 1/input.fa reference_genome|ref|ref_source: history outputs|png: False outputs|svg: False outputs|tar: True |
name: value |
1/input.fa value |
| Test-5 |
reference_genome|ref|input_karyotype: 3/chrom.tab reference_genome|ref|ref_source: karyotype outputs|png: True |
name: value |
3/chrom.tab value |