Repository revision
7:9db0d2cf4451

Repository 'qiime_filter_otus_from_otu_table'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/qiime_filter_otus_from_otu_table

Filter OTUs from an OTU table tool metadata
Miscellaneous
based on their observation counts or identifier (filter_otus_from_otu_table)
qiime_filter_otus_from_otu_table
toolshed.g2.bx.psu.edu/repos/iuc/qiime_filter_otus_from_otu_table/qiime_filter_otus_from_otu_table/1.9.1.0
1.9.1.0
filter_otus_from_otu_table.py --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/qiime_filter_otus_from_otu_table/qiime_filter_otus_from_otu_table/1.9.1.0 (this tool)
qiime_filter_otus_from_otu_table
Requirements (dependencies defined in the <requirements> tag set)
name version type
qiime 1.9.1 package
Functional tests
name inputs outputs required files
Test-1 max_samples: 350
id_filtering_condition|id_filtering_switch: no
input_fp: filter_otus_from_otu_table/otu_table.biom
max_count: 1000
min_count: 2
min_samples: 5
attributes: name
filter_otus_from_otu_table/otu_table.biom
name
Test-2 id_filtering_condition|negate_ids_to_exclude: False
id_filtering_condition|otu_ids_to_exclude_fp: filter_otus_from_otu_table/chimeric_otus.txt
input_fp: filter_otus_from_otu_table/otu_table.biom
id_filtering_condition|id_filtering_switch: yes
attributes: name
filter_otus_from_otu_table/otu_table.biom
filter_otus_from_otu_table/chimeric_otus.txt
name
Test-3 id_filtering_condition|negate_ids_to_exclude: True
id_filtering_condition|otu_ids_to_exclude_fp: filter_otus_from_otu_table/chimeric_otus.txt
input_fp: filter_otus_from_otu_table/otu_table.biom
id_filtering_condition|id_filtering_switch: yes
attributes: name
filter_otus_from_otu_table/otu_table.biom
filter_otus_from_otu_table/chimeric_otus.txt
name