| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/abaizan/kodoja/kodoja_search/0.0.8 (this tool) |
| toolshed.g2.bx.psu.edu/repos/abaizan/kodoja/kodoja_search/0.0.7 |
| toolshed.g2.bx.psu.edu/repos/abaizan/kodoja/kodoja_search/0.0.6 |
| toolshed.g2.bx.psu.edu/repos/abaizan/kodoja/kodoja_search/0.0.0 |
| kodoja_search |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| kodoja | 0.0.8 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
single_paired|input_sequences: testData_1.fastq kaiju_db: kaiju3viruses single_paired|single_paired_selector: no kraken_db: kraken3viruses |
attributes: name |
testData_1.fastq name |
| Test-2 |
single_paired|reverse_input: testData_2.fastq kaiju_db: kaiju3viruses single_paired|single_paired_selector: yes single_paired|forward_input: testData_1.fastq kraken_db: kraken3viruses |
attributes: name |
testData_1.fastq testData_2.fastq name |
| Test-3 |
kaiju_db: kaiju3viruses single_paired|forward_input: testData_1.fastq single_paired|single_paired_selector: yes capture_reads_table: True single_paired|reverse_input: testData_2.fastq kraken_db: kraken3viruses |
attributes: name attributes: name |
testData_1.fastq testData_2.fastq name |
| Test-4 |
single_paired|reverse_input: testData_2.fasta kaiju_db: kaiju3viruses single_paired|single_paired_selector: yes single_paired|forward_input: testData_1.fasta kraken_db: kraken3viruses |
attributes: name |
testData_1.fasta testData_2.fasta name |