| Kodoja takes the raw data (either fasta or fastq) and uses Kraken, a k-mer-based tool, and Kaiju, which used the Burrows–Wheeler transform, to detect viral sequences in RNA-seq or sRNA-seq data. |
hg clone https://toolshed.g2.bx.psu.edu/repos/abaizan/kodoja
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| identify viruses from plant RNA sequencing data | 0.0.8 | 16.01 | |