| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_unionbedgraph/2.30.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_unionbedgraph/2.22.0 |
| bedtools_unionbedgraph |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bedtools | 2.30.0 | package |
| Additional information about this tool |
unionBedGraphs
$header
-filler '${filler}'
$empty.empty_selector
#if $empty.empty_selector == "-empty":
#if $empty.genome_file_opts.genome_file_opts_selector == "loc":
-g '$empty.genome_file_opts.genome.fields.len_path'
#elif $empty.genome_file_opts.genome_file_opts_selector == "hist":
-g '$empty.genome_file_opts.genome'
#end if
#end if
#if str($tag.tag_select) == "tag":
-i
#for $file in $tag.inputs:
'${file}'
#end for
#else:
-i
#for $bg in $tag.bedgraphs:
'${bg.input}'
#end for
-names
#for $bg in $tag.bedgraphs:
'${bg.custom_name}'
#end for
#end if
> '${output}'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
tag|inputs: ['unionBedGraphs1.bg', 'unionBedGraphs2.bg', 'unionBedGraphs3.bg'] tag|tag_select: tag empty|empty_selector: |
name: value |
unionBedGraphs1.bg unionBedGraphs2.bg unionBedGraphs3.bg value |
| Test-2 |
tag|inputs: ['unionBedGraphs1.bg', 'unionBedGraphs2.bg', 'unionBedGraphs3.bg'] tag|tag_select: tag empty|empty_selector: header: True |
name: value |
unionBedGraphs1.bg unionBedGraphs2.bg unionBedGraphs3.bg value |
| Test-3 |
tag|inputs: ['unionBedGraphs1.bg', 'unionBedGraphs2.bg', 'unionBedGraphs3.bg'] tag|tag_select: tag empty|genome_file_opts|genome: unionBedGraphs1.len empty|genome_file_opts|genome_file_opts_selector: hist empty|empty_selector: -empty |
name: value |
unionBedGraphs1.bg unionBedGraphs2.bg unionBedGraphs3.bg unionBedGraphs1.len value |
| Test-4 |
tag|bedgraphs_0|input: unionBedGraphs1.bg tag|bedgraphs_0|custom_name: first tag|bedgraphs_1|input: unionBedGraphs2.bg tag|bedgraphs_1|custom_name: second tag|bedgraphs_2|input: unionBedGraphs3.bg tag|bedgraphs_2|custom_name: third tag|tag_select: custom empty|genome_file_opts|genome: unionBedGraphs1.len empty|genome_file_opts|genome_file_opts_selector: hist empty|empty_selector: -empty |
name: value |
unionBedGraphs1.bg unionBedGraphs2.bg unionBedGraphs3.bg unionBedGraphs1.len value |