qiime emperor biplot

--i-biplot=$ibiplot


#if $m_sample_metadatafile:
#def list_dict_to_string_sample_mdata(list_dict):
#set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
#for d in list_dict[1:]:
	#set $file_list = $file_list + ' --m-sample-metadata-file=' + d['additional_input'].__getattr__('file_name')
#end for
#return $file_list
#end def
--m-sample-metadata-file=$list_dict_to_string_sample_mdata($m_sample_metadatafile)
#end if



#if $m_feature_metadatafile:
#def list_dict_to_string_feature_mdata(list_dict):
#set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
#for d in list_dict[1:]:
	#set $file_list = $file_list + ' --m-feature-metadata-file=' + d['additional_input'].__getattr__('file_name')
#end for
#return $file_list
#end def
--m-feature-metadata-file=$list_dict_to_string_feature_mdata($m_feature_metadatafile)
#end if



#if $pignoremissingsamples:
 --p-ignore-missing-samples
#end if

#if str($pnumberoffeatures):
 --p-number-of-features=$pnumberoffeatures
#end if
 
--o-visualization=ovisualization
;
qiime tools export --input-path ovisualization.qzv --output-path out   && mkdir -p '$ovisualization.files_path'
&& cp -r out/* '$ovisualization.files_path'
&& mv '$ovisualization.files_path/index.html' '$ovisualization'