| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/deepvariant/deepvariant/1.4.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/deepvariant/deepvariant/1.2.0+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/deepvariant/deepvariant/1.2.0+galaxy0 |
| deepvariant |
| Requirements (dependencies defined in the <requirements> tag set) |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
reference_genome|history_item: reference.fasta reference_genome|source: history reads: reads.bam model_type: WGS regions_conditional|regions_option: disabled output_gvcf: False |
name: value name: value |
reference.fasta reads.bam value |
| Test-2 |
reference_genome|history_item: reference.fasta reference_genome|source: history reads: reads.bam model_type: WGS regions_conditional|region_literal: K03455:1-2669 regions_conditional|regions_option: region |
name: value name: value |
reference.fasta reads.bam value |
| Test-3 |
reference_genome|history_item: reference.fasta reference_genome|source: history reads: reads.bam model_type: WGS regions_conditional|bed_file: region.bed regions_conditional|regions_option: bed |
name: value name: value |
reference.fasta reads.bam region.bed value |
| Test-4 |
reference_genome|history_item: reference.fasta reference_genome|source: history reads: reads.bam model_type: WGS regions_conditional|region_literal: K03455:1-2669 regions_conditional|regions_option: region output_gvcf: True |
name: value name: value name: value |
reference.fasta reads.bam value |
| Test-5 |
reference_genome|history_item: reference.fasta reference_genome|source: history reads: reads.cram model_type: WGS regions_conditional|regions_option: disabled |
name: value name: value |
reference.fasta reads.cram value |
| Test-6 |
reference_genome|index: phix174 reference_genome|source: indexed reads: reads.bam model_type: WGS regions_conditional|regions_option: disabled |
name: value name: value |
reads.bam value |