Repository revision
0:9f74a22d2060

Repository 'sra_tools'
hg clone https://toolshed.g2.bx.psu.edu/repos/mvdbeek/sra_tools

Extract reads tool metadata
Miscellaneous
in SAM or BAM format from NCBI SRA.
sam_dump
toolshed.g2.bx.psu.edu/repos/mvdbeek/sra_tools/sam_dump/1.2.4
1.2.4
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/mvdbeek/sra_tools/sam_dump/1.2.4 (this tool)
sam_dump
Requirements (dependencies defined in the <requirements> tag set)
name version type
ngs_sdk 1.1.3 package
ncbi_vdb 2.5.2 package
sra_toolkit 2.5.2 package
ascp 3 package
perl 5.18.1 package
Functional tests
name inputs outputs required files
Test-1 input|input_select: accession_number
outputformat: sam
input|accession: SRR925743
adv|region: 17:41243452-41277500
output_accession: sam_dump_result.sam
sam_dump_result.sam