This repository has been marked as deprecated, so some tool shed features may be restricted.
Repository sra_tools
Name: sra_tools
Owner: mvdbeek
Synopsis: NCBI Sequence Read Archive toolkit utilities
The Galaxy tool wrappers contained in this tool shed repository rely on software developed by the NCBI Sequence Read Archive: http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software. Use of SRA Toolkit software herin should comply with the GPL v2 or greater. Copyright (C) 2013 Matthew Shirley This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>. INSTALLATION This software release was designed to run under Linux, MacOSX operating systems on Intel x86-compatible 64 bit architectures. Build Requirements: ar bash make gcc, g++ libxml2 libcurl4 zlib On a debian based Linux OS use: apt-get install build-essential libxml2-dev libcurl4-openssl-dev zlib-dev CONTROLLED-ACCESS DATA Encrypted, controlled-access data is not supported in this version of the SRA Toolkit Galaxy tool shed.
Content homepage: http://artbio.fr
Type: unrestricted
Revision: 0:9f74a22d2060
This revision can be installed: True
Times cloned / installed: 60
Dependencies of this repository

Repository package_ngs_sdk_1_1_3 revision 2cc3f1941cb5 owned by mvdbeek (prior install required)
Repository package_perl_5_18 revision 35f117d7396b owned by iuc (prior install required)
Repository package_gnu_coreutils_8_25 revision a177f177d42f owned by iuc (prior install required)
Repository package_ascp_3 revision e109f0ec22c3 owned by mvdbeek
Repository package_perl_5_18 revision 35f117d7396b owned by iuc (prior install required)
Repository package_ncbi_vdb_2_5_2 revision 1d307129f4f2 owned by mvdbeek (prior install required)
Repository package_ngs_sdk_1_1_3 revision 2cc3f1941cb5 owned by mvdbeek (prior install required)
Repository package_ascp_3 revision e109f0ec22c3 owned by mvdbeek

Name Version Type
ascp 3 package
ncbi_vdb 2.5.2 package
ngs_sdk 1.1.3 package
perl 5.18.1 package
sra_toolkit 2.5.2 package

Contents of this repository

Name Description Version Minimum Galaxy Version
in SAM or BAM format from NCBI SRA. 1.2.4 any
in FASTQ/A format from NCBI SRA. 1.2.4 any
from NCBI sra. 1.2.4 any

Categories
Data Source - Tools for retrieving data from external data sources
Fastq Manipulation - Tools for manipulating fastq data