Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_remove_lineage/mothur_remove_lineage/1.39.5.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_remove_lineage/mothur_remove_lineage/1.36.1.0 |
mothur_remove_lineage |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
mothur | 1.39.5 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
file|taxonomy: abrecovery.pds.wang.taxonomy file|filetype: usetaxonomy taxon: Bacteria;Firmicutes; count: amazon.count_table |
name: value name: value |
abrecovery.pds.wang.taxonomy amazon.count_table value |
Test-2 |
file|taxonomy: abrecovery.pds.wang.taxonomy file|filetype: usetaxonomy taxon: Bacteria;Firmicutes;,Bacteria;Actinobacteria; fasta_in: abrecovery.fasta group_in: abrecovery.groups alignreport_in: Mock_S280_L001_R1_001_small.contigs.report list_in: amazon.an.list name_in: abrecovery.names |
name: value name: value name: value name: value name: value |
abrecovery.pds.wang.taxonomy abrecovery.fasta abrecovery.groups Mock_S280_L001_R1_001_small.contigs.report amazon.an.list abrecovery.names value |
Test-3 |
file|taxonomy: abrecovery.pds.wang.taxonomy file|taxons: ['Bacteria(100);Firmicutes(100);Clostridia(100);Clostridiales(100);Lachnospiraceae(100);Dorea(99);', 'Bacteria(100);Firmicutes(100);Clostridia(100);Clostridiales(100);Lachnospiraceae(100);Roseburia(47);'] file|filetype: usetaxonomy |
name: value |
abrecovery.pds.wang.taxonomy value |
Test-4 |
file|taxonomy: example.constaxonomy file|filetype: useconstaxonomy taxon: Bacteria;Bacteroidetes; |
name: value |
example.constaxonomy value |
Test-5 |
file|taxonomy: example.constaxonomy file|taxons: ['Bacteria(100);Firmicutes(100);Clostridia(70);Clostridiales(70);Lachnospiraceae(51);unclassified;', 'Bacteria(100);Proteobacteria(100);Gammaproteobacteria(100);unclassified;unclassified;unclassified;'] file|filetype: useconstaxonomy |
name: value |
example.constaxonomy value |