| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_bdgbroadcall/2.2.9.1+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_bdgbroadcall/2.1.0.20140616.0 |
| macs2_bdgbroadcall |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| macs2 | 2.2.9.1 | package |
| r-base | 4.3 | package |
| gawk | 5.1.0 | package |
| Additional information about this tool |
export PYTHON_EGG_CACHE=`pwd` &&
macs2 bdgbroadcall
--ifile '${ infile }'
--cutoff-peak '${ cutoffpeak }'
--cutoff-link '${ cutofflink }'
--min-length '${ minlen }'
--lvl1-max-gap '${ LVL1MAXGAP }'
--lvl2-max-gap '${ LVL2MAXGAP }'
--ofile "macs2_bdgbroadcall.bdg"
&&
awk '!/^track name/' "macs2_bdgbroadcall.bdg" > '${ outfile }'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
infile: bdgbroadcall_input.bdg cutoffpeak: 2.0 cutofflink: 1.0 minlen: 200 LVL1MAXGAP: 30 LVL2MAXGAP: 800 |
name: value |
bdgbroadcall_input.bdg value |