Mercurial > repos > anmoljh > align_and_estimate_abundance

changeset 3:5587e12bd075 draft default tip

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Uploaded
author anmoljh
date Fri, 28 Aug 2015 06:45:47 -0400
parents 96a9a03f8948
children
files align_and_estimate_abundance.xml tool_dependencies.xml
diffstat 2 files changed, 4 insertions(+), 0 deletions(-) [+]
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--- a/align_and_estimate_abundance.xml	Thu Aug 27 12:41:35 2015 -0400
+++ b/align_and_estimate_abundance.xml	Fri Aug 28 06:45:47 2015 -0400
@@ -5,6 +5,7 @@
 <requirements>
 	<requirement type="package" version="r20140717">trinityrnaseq</requirement>
 	<requirement type="package" version="0.12.7">bowtie</requirement>
+	<requirement type="package" version="2.2.5">bowtie2</requirement>
 	<requirement type="package" version="1.2">samtools</requirement>
 	<requirement type="package" version="1.5.1">eXpress</requirement>
 </requirements>
--- a/tool_dependencies.xml	Thu Aug 27 12:41:35 2015 -0400
+++ b/tool_dependencies.xml	Fri Aug 28 06:45:47 2015 -0400
@@ -6,6 +6,9 @@
     <package name="bowtie" version="0.12.7"> 
 	<repository changeset_revision="9f9f38617a98" name="package_bowtie_0_12_7" prior_installation_required="True" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />	
     </package>
+    <package name="bowtie2" version="2.2.5">
+	<repository changeset_revision="8b300d21e6bd" name="package_bowtie_2_2_5" prior_installation_required="True" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
+    </package>	
     <package name="samtools" version="1.2">
 	<repository changeset_revision="f6ae3ba3f3c1" name="package_samtools_1_2" prior_installation_required="True" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
     </package>