changeset 3:8b1020c25f0f draft default tip

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cpm_tpm_rpk commit 9149001c65de633ddfd2f91cf208074e40482ce3
author artbio
date Fri, 12 Apr 2019 12:01:35 -0400
parents 563337e780ce
children
files cpm_tpm_rpk.R cpm_tpm_rpk.xml test-data/none.tab test-data/none_pca.pdf test-data/none_tsne.pdf test-data/pca.nolab.pdf test-data/pca.pdf test-data/tsne.nolab.pdf test-data/tsne.pdf
diffstat 9 files changed, 250 insertions(+), 11 deletions(-) [+]
line wrap: on
line diff
--- a/cpm_tpm_rpk.R	Wed Feb 06 19:31:57 2019 -0500
+++ b/cpm_tpm_rpk.R	Fri Apr 12 12:01:35 2019 -0400
@@ -29,7 +29,7 @@
     c("-t", "--type"),
     default = 'cpm',
     type = 'character',
-    help = "Transformation type, either cpm, tpm or rpk [default : '%default' ]"
+    help = "Transformation type, either cpm, tpm, rpk or none[default : '%default' ]"
   ),
   make_option(
     c("-s", "--sep"),
@@ -127,7 +127,7 @@
 } else if ((opt$type == "tpm" | opt$type == "rpk") & opt$gene == "") {
   stop("At least two arguments must be supplied (count data and gene length file).\n",
        call. = FALSE)
-} else if (opt$type != "tpm" & opt$type != "rpk" & opt$type != "cpm") {
+} else if (opt$type != "tpm" & opt$type != "rpk" & opt$type != "cpm" & opt$type != "none") {
   stop("Wrong transformation requested (--type option) must be : cpm, tpm or rpk.\n",
        call. = FALSE)
 }
@@ -153,6 +153,7 @@
 
 data = read.table(
   opt$data,
+  check.names = FALSE,
   header = opt$colnames,
   row.names = 1,
   sep = opt$sep
@@ -177,6 +178,8 @@
   res = as.data.frame(apply(data, 2, tpm, length = gene_length), row.names = rownames(data))
 if (opt$type == "rpk")
   res = as.data.frame(apply(data, 2, rpk, length = gene_length), row.names = rownames(data))
+if (opt$type == "none")
+  res = data
 colnames(res) = colnames(data)
 
 
@@ -206,7 +209,7 @@
   embedding$Class <- as.factor(sub("Class_", "", rownames(tdf)))
   gg_legend = theme(legend.position="none")
   ggplot(embedding, aes(x=V1, y=V2)) +
-    geom_point(size=1.25, color='red') +
+    geom_point(size=1, color='red') +
     gg_legend +
     xlab("") +
     ylab("") +
@@ -215,16 +218,20 @@
       geom_text(aes(label=Class),hjust=-0.2, vjust=-0.5, size=2.5, color='darkblue')
     }
   ggsave(file=opt$tsne_out, device="pdf")
-  # make PCA and plot result with ggfortify
+  # make PCA and plot result with ggfortify (autoplot)
   tdf.pca <- prcomp(tdf, center = TRUE, scale. = T)
   if (opt$tsne_labels == TRUE) {
-      autoplot(tdf.pca, shape=F, label=T, label.size=2.5, colour="darkred") +
+      autoplot(tdf.pca, shape=F, label=T, label.size=2.5, label.vjust=1.2,
+               label.hjust=1.2,
+               colour="darkblue") +
+      geom_point(size=1, color='red') +
       xlab(paste("PC1",summary(tdf.pca)$importance[2,1]*100, "%")) +
       ylab(paste("PC2",summary(tdf.pca)$importance[2,2]*100, "%")) +
       ggtitle('PCA')
       ggsave(file=opt$pca_out, device="pdf")   
       } else {
-      autoplot(tdf.pca, shape=T, colour="red") +
+      autoplot(tdf.pca, shape=T, colour="darkblue") +
+      geom_point(size=1, color='red') +
       xlab(paste("PC1",summary(tdf.pca)$importance[2,1]*100, "%")) +
       ylab(paste("PC2",summary(tdf.pca)$importance[2,2]*100, "%")) +
       ggtitle('PCA') 
--- a/cpm_tpm_rpk.xml	Wed Feb 06 19:31:57 2019 -0500
+++ b/cpm_tpm_rpk.xml	Fri Apr 12 12:01:35 2019 -0400
@@ -1,4 +1,4 @@
-<tool id="cpm_tpm_rpk" name="Generate CPM, TPM, RPK" version="0.3.0">
+<tool id="cpm_tpm_rpk" name="Generate CPM, TPM, RPK" version="0.4.0">
     <description>from raw counts expression values</description>
     <requirements>
         <requirement type="package" version="1.3.2=r3.3.2_0">r-optparse</requirement>
@@ -64,6 +64,7 @@
                     <option value="cpm" selected="true">CPM</option>
                     <option value="tpm">TPM</option>
                     <option value="rpk">RPK</option>
+                    <option value="none">NONE</option>
                 </param>
                 <when value="tpm">
                     <param name="gene_file" type="data" format="txt" label="Gene length file"/> 
@@ -97,6 +98,8 @@
                 </when>
                 <when value="cpm">
                 </when>
+                <when value="none">
+                </when>
             </conditional>
         <param name="log" type="select" label="Data should be log transformed ?">
             <option value="FALSE" selected="true">No</option>
@@ -108,10 +111,10 @@
                 <option value="yes" >t-SNE and PCA</option>
             </param>
             <when value="yes">
-                    <param name="seed" value="49.0" type="float" label="Seed value for reproducibility" help="Set to 49 as default" />
-                    <param name="perp" value="10.0" type="float" label="perplexity" help="should be less than ((nbre observations)-1)/3" /> 
-                    <param name="theta" value="1.0" type="float" label="theta"/>
-                    <param name="tsne_labels" type="select" label="Add labels to points in the t-SNE plot" >
+                    <param name="seed" value="49.0" type="float" label="Seed value for reproducibility of t-SNE" help="Set to 49 as default" />
+                    <param name="perp" value="10.0" type="float" label="perplexity (t-SNE)" help="should be less than ((nbre observations)-1)/3" /> 
+                    <param name="theta" value="1.0" type="float" label="theta (t-SNE)"/>
+                    <param name="tsne_labels" type="select" label="Add labels to points plots" >
                         <option value="no" selected="true">No Labels</option>
                         <option value="yes" >Label points</option>
                     </param>
@@ -136,6 +139,19 @@
     <tests>
         <!-- test t-SNE -->
         <test>
+            <param name="input" value="none.tab" ftype="tabular"/>
+            <param name="type_transfo" value="none"/>
+            <param name="log" value="FALSE"/>
+            <param name="visualisation" value="yes"/>
+            <param name="seed" value="49"/>
+            <param name="perp" value="10"/>
+            <param name="theta" value="1" />
+            <param name="tsne_labels" value="yes" />
+            <output name="output" file="none.tab" ftype="tabular"/>
+            <output name="tsne_out" file="none_tsne.pdf" ftype="pdf"/>
+            <output name="pca_out" file="none_pca.pdf" ftype="pdf"/>
+        </test>
+        <test>
             <param name="input" value="counts.tab" ftype="tabular"/>
             <param name="type_transfo" value="cpm"/>
             <param name="log" value="TRUE"/>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/none.tab	Fri Apr 12 12:01:35 2019 -0400
@@ -0,0 +1,216 @@
+Features	20nM_1	20sM_4	32nM_7	32sM_10	40nM_13	40sM_16	20n1d_a	20n1d_b	30n5h_c1	30n5h_c2	30s5h_c3	30s5h_c4	40n5h_c5	40n5h_c6	40s5h_c7	40s5h_c8	20n1d_c	20s1d_d	20s1d_e	20s1d_f	30n1d_g	30n1d_h	30n1d_i	30s1d_j	30s1d_k	30s1d_l	40n1d_m	40n1d_n	40n1d_o	40s1d_p	40s1d_q	40s1d_r
+5S_DM	0	0	0	0	2.52271103749722	0	0	1.46876851779219	1.10607886502204	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.51278181441303	2.52260597944523	0	0	0	2.05794942496048	0.646139123391797
+ACCORD2_I-int	13.4694287027486	19.7873189245625	17.5674602110498	50.6988197972739	17.6589772624805	19.313391508794	18.1589910793351	13.2189166601297	12.1668675152425	18.2343843151734	26.0100186444685	27.0989940048899	23.1050300244153	31.4819885379018	24.4065408703064	27.0644930469596	9.83737686997288	16.0386739801143	14.5565923551731	13.0633061628418	25.016895793462	24.992288899494	17.9393955029792	28.3792668127381	19.8019745551662	35.5503726387062	17.6582418561166	22.6167312355617	26.939353284346	26.4137500118019	25.7243678120059	41.9990430204668
+ACCORD2_LTR	0	0.860318214111411	0	2.25328087987884	3.78406655624583	2.75905592982771	1.13493694245845	0	2.21215773004408	0	4.0640654131982	3.69531736430316	1.84840240195322	4.49742693398597	1.10938822137756	2.00477726273775	0	1.33655616500952	0.970439490344876	2.61266123256835	4.46730282026107	3.22481147090245	2.4462812049517	2.74638065929724	2.47524681939578	1.51278181441303	0	10.3660018162991	2.78682965010476	0	1.02897471248024	5.16911298713437
+ACCORD_I-int	16.1633144432983	28.3905010656766	29.6450891061465	33.7992131981826	18.9203327812291	43.2252095673008	30.643297446378	19.0939907312984	11.0607886502204	53.8743172948305	18.6947009007117	23.4036766405867	36.0438468380879	25.1855908303214	25.5159290916839	48.114654305706	16.3956281166215	17.3752301451238	16.4974713358629	24.8202817093994	36.6318831261408	29.8295061058477	34.2479368693238	26.5483463732066	24.7524681939578	21.9353363089889	31.5325747430654	21.6743674340799	22.2946372008381	40.0760345006649	40.1300137867293	58.7986602286535
+ACCORD_LTR	0.897961913516572	2.58095464233423	0	0	0	0	0	0	0	3.3153426027588	0.812813082639639	2.46354490953544	1.84840240195322	0	1.10938822137756	6.01433178821325	0	0	0	1.30633061628418	0	1.61240573545123	1.63085413663447	0.915460219765745	0.825082273131927	0	0	1.88472760296347	0	0	5.14487356240119	1.93841737017539
+ALA_DM	1.79592382703314	0	0	0	0	0	1.13493694245845	0	0	0	0	0	0	0	1.10938822137756	0	0	0	0	0	0	0	0	1.83092043953149	0	0	0	0	0	0	0	0.646139123391797
+ARS406_DM	4.48980956758286	8.60318214111411	10.9796626319061	14.6463257192125	16.3976217437319	8.27716778948314	13.6192433095013	2.93753703558437	12.1668675152425	14.0902060617249	16.2562616527928	8.62240718337405	16.635621617579	7.19588309437755	15.5314350992859	17.0406067332709	21.8608374888286	12.0290054850857	14.5565923551731	15.6759673954101	12.508447896731	18.5426659576891	14.6776872297102	11.9009828569547	8.25082273131927	18.1533817729563	18.9195448458392	14.1354570222261	13.0052050338222	6.37573276146942	7.20282298736166	14.8611998380113
+BARI1	16.1633144432983	8.60318214111411	17.5674602110498	9.01312351951536	16.3976217437319	17.4740208889088	10.214432482126	10.2813796245453	4.42431546008817	11.6036991096558	7.31531774375675	17.2448143667481	6.46940840683628	8.99485386797193	4.43755288551025	14.0334408391642	14.2095443677386	13.3655616500952	17.4679108262078	23.5139510931152	5.36076338431329	11.2868401481586	8.96969775148958	15.5628237360177	11.551151823847	10.5894727008912	6.30651494861307	1.88472760296347	10.2183753837175	9.10818965924203	9.26077241232214	10.3382259742687
+BARI_DM	27.8368193190137	18.0666824963396	14.2735614214779	15.7729661591519	22.7043993374749	14.7149649590811	19.2939280217936	36.7192129448047	23.2276561654629	18.2343843151734	17.0690747354324	13.5494970024449	17.5598228185556	17.0902223491467	12.2032704351532	25.0597157842219	15.30258624218	13.3655616500952	17.4679108262078	9.14431431398924	18.7626718450965	17.7364630899635	17.9393955029792	18.3092043953149	18.1518100089024	12.8586454225107	16.396938866394	20.7320036325982	24.1525236342413	24.5921120799535	20.5794942496048	23.2610084421047
+BATUMI_I-int	86.2043436975909	71.4064117712471	95.5230648975831	108.157482234184	105.953863574883	155.426817380294	111.223820360928	49.9381296049344	105.077492177094	163.280623185871	145.493541792495	103.468886200489	183.916038994346	187.092960453816	144.220468779083	175.418010489553	81.9781405831073	77.5202575705524	72.7829617758657	114.957094233008	111.682570506527	117.705618687939	125.575768520854	128.164430767204	106.435613234019	105.894727008912	134.95941990032	148.893480634114	143.057255372044	149.374310411569	156.404156296996	155.719528737423
+BATUMI_LTR	1.79592382703314	4.30159107055705	8.78373010552489	2.25328087987884	11.3521996687375	9.19685309942571	3.40481082737534	1.46876851779219	6.63647319013225	2.4865069520691	8.12813082639639	4.92708981907089	8.31781080878951	8.09536848117474	5.54694110688781	9.02149768231987	2.18608374888286	1.33655616500952	5.82263694206925	1.30633061628418	8.04114507646993	9.67443441270735	4.07713534158617	6.40822153836022	0.825082273131927	1.51278181441303	8.8291209280583	9.42363801481737	3.71577286680635	5.46491379554522	0	4.52297386374258
+BEL_I-int	368.164384541794	405.209878846475	400.757686064573	429.250007616919	373.361233549588	480.075731790022	409.712236227499	468.537157175708	340.672290426789	394.525769728298	424.288429137892	399.094275344742	330.864029949627	423.657617181478	370.535665940106	380.907679920172	354.145567319024	356.860496057543	446.402165558643	419.332127827221	466.386414435256	470.016271884032	401.190117612079	495.263978893268	489.273787967232	385.759362675322	454.069076300141	453.276988512715	451.466403316971	441.747198473238	531.979926352283	398.021700009347
+BEL_LTR	13.4694287027486	16.3460460681168	32.9389878957183	24.7860896786672	25.2271103749722	22.9921327485643	26.1035496765443	22.0315277668828	27.651971625551	19.8920556165528	17.0690747354324	39.4167185525671	24.0292312253919	25.1855908303214	33.2816466413268	27.0644930469596	26.2330049865943	17.3752301451238	18.4383503165526	16.9822980116943	36.6318831261408	27.4108975026708	26.9090932544687	28.3792668127381	32.1782086521451	14.3714272369238	20.1808478355618	33.9250968533425	25.0814668509429	36.4327586369681	37.0430896492886	27.1378431824555
+BLASTOPIA_I-int	118.530972584187	142.812823542494	109.796626319061	156.603021151579	132.442329468604	114.040978432879	171.375478311225	129.251629565712	122.774754017447	119.352333699317	127.611653974423	119.481928112469	127.539765734772	134.922808019579	143.111080557705	125.298578921109	123.513731811882	143.011509656019	134.891089157938	131.939392244702	129.551781787571	133.023473174726	150.854007638688	123.587129668376	122.937258696657	94.5488634008143	171.537206602276	112.141292376327	95.6811513202635	122.049741433843	143.027485034753	124.058711691225
+BLASTOPIA_LTR	17.9592382703314	18.0666824963396	24.1552577901934	20.2795279189096	34.0565990062124	13.7952796491386	19.2939280217936	22.0315277668828	17.6972618403527	26.5227408220704	16.2562616527928	17.2448143667481	27.7260360292984	23.386620056727	28.8440937558166	18.0429953646397	10.9304187444143	14.7021178151048	20.3792292972424	19.5949592442627	14.2953690248354	16.9302602222379	19.5702496396136	26.5483463732066	23.9273859208259	21.1789454017824	26.4873627841749	15.0778208237078	17.6499211173302	28.2353879436503	18.5215448246443	21.3225910719293
+BLOOD_I-int	476.8177760773	522.213155965626	466.63566185601	413.477041457767	552.47371721189	458.0032843514	511.856561048759	568.413416385576	602.812981437013	435.138716612093	542.959139203279	612.190910019558	477.812020904908	510.907699700806	539.162675589495	486.158486213904	546.520937220715	576.055707119105	623.02215280141	646.633655060667	394.909569311079	503.876792328508	459.90086653092	531.882387683898	530.527901623829	545.357844095897	543.621588570447	495.683359579394	477.476813384616	458.141939859874	636.935347025267	443.897577770164
+BLOOD_LTR	1.79592382703314	4.30159107055705	0	0	0	2.75905592982771	2.26987388491689	2.93753703558437	0	3.3153426027588	2.43843924791892	0	1.84840240195322	0	4.43755288551025	1.00238863136887	0	0	0	0	1.78692112810443	0.806202867725613	0.815427068317234	0.915460219765745	0	2.26917272161954	0	1.88472760296347	0.928943216701587	1.82163793184841	4.11589884992095	0
+BS	23.3470097514309	18.927000710451	19.763392737431	13.519685279273	10.0908441499889	16.5543355789663	19.2939280217936	11.7501481423375	29.8641293555951	13.2613704110352	10.5665700743153	9.85417963814177	7.39360960781289	15.2912515755523	16.6408233206634	11.0262749450576	20.7677956143872	10.6924493200762	15.527031845518	24.8202817093994	11.6149873326788	17.7364630899635	12.2314060247585	16.4782839557834	18.9768922820343	12.8586454225107	16.396938866394	25.4438226400069	15.792034683927	15.4839224207114	12.3476965497629	11.6305042210523
+BS2	475.919814163783	591.038613094539	617.057039913123	504.73491709286	509.587629574438	456.163913731515	567.468471229223	658.0082959709	633.78318965763	531.283652092098	556.776961608153	618.349772293396	606.275987840657	516.304612021589	487.021429184749	383.914845814279	809.9440289611	654.912520854667	603.613362994513	684.517242932909	494.083691920875	523.225661153923	590.369197461678	478.785694937485	672.44205260252	663.354825620113	527.224649704053	506.991725197174	357.643138430111	506.415345053857	580.341737838854	454.235803744433
+BS3_DM	35.0205146271463	22.3682735668967	17.5674602110498	20.2795279189096	13.8749107062347	19.313391508794	22.6987388491689	14.6876851779219	6.63647319013225	18.2343843151734	17.8818878180721	9.85417963814177	15.7114204166024	8.09536848117474	13.3126586565307	22.0525498901152	15.30258624218	32.0773479602286	33.9653821620706	22.207620476831	18.7626718450965	11.2868401481586	13.0468330930758	14.6473635162519	18.1518100089024	17.3969908657498	11.3517269075035	24.5014588385252	11.147318600419	21.8596551821809	27.7823172369664	16.1534780847949
+BS4_DM	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+BURDOCK_I-int	119.428934497704	104.958822121592	117.482390161395	130.690291032973	121.090129799866	116.800034362707	129.382811440263	105.751333281037	122.774754017447	145.046238870698	104.852887660513	141.653832298288	143.251186151375	98.9433925476913	153.095574550103	149.355906073962	135.537192430737	128.309391840914	143.625044571042	133.245722860986	133.12562404378	135.442081777903	157.377424185226	107.108845712592	131.188081427976	79.421045256684	150.095055776991	123.449657994108	143.057255372044	116.584827638298	125.534914922589	152.488833120464
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+DMRP1	16.1633144432983	8.60318214111411	14.2735614214779	11.2664043993942	12.6135551874861	18.3937061988514	23.8336757916274	23.500296284675	7.74255205515429	14.0902060617249	8.12813082639639	2.46354490953544	13.8630180146492	12.5927954151607	16.6408233206634	11.0262749450576	12.0234606188557	10.6924493200762	18.4383503165526	1.30633061628418	17.8692112810443	12.0930430158842	10.600551888124	15.5628237360177	11.551151823847	10.5894727008912	12.6130298972261	16.0201846251895	11.147318600419	11.8406465570146	11.3187218372826	10.9843650976605
+DMRPR	60.1634482056103	61.9429114160216	58.1922119491024	50.6988197972739	36.5793100437096	45.064580187186	45.3974776983378	64.6258147828562	73.0012050914548	59.6761668496584	62.5866073632522	41.8802634621025	47.1342612498072	45.8737547266569	52.1412464047454	29.0692703096974	87.4433499553145	72.1740329105143	70.8420827951759	80.992498209619	50.9272521509762	55.6279978730673	53.0027594406202	45.7730109882873	57.7557591192349	61.2676634837277	58.0199375272403	54.6571004859407	53.8787065686921	45.5409482962101	41.1589884992095	55.5679646116945
+DMRT1A	217.30678307101	133.349323187269	287.66716095594	147.589897632064	272.452792049699	162.784299859835	242.876505686107	346.629370198956	206.836747759122	242.848845652082	147.119167957775	162.593964029339	339.181840758417	292.332750709088	216.330703168624	381.910068551541	274.353510484799	130.982504170933	133.920649667593	198.562253675195	199.241705783644	317.643929883891	211.195610694164	198.654867689167	205.44548600985	146.739835998064	223.250629180903	266.688955819332	235.951577042203	240.45620700399	182.128524109002	183.50351104327
+DMRT1B	80.8165722164915	62.803229630133	79.053570949724	81.1181116756383	65.5904869749276	97.4866428539125	48.8022885257132	63.157046265064	98.4410189869617	102.775620685523	158.49855111473	103.468886200489	60.0730780634798	88.1495679061249	108.720045695001	74.1767587212967	63.396428717603	116.280386355829	113.54142037035	83.6051594421873	84.8787535849604	82.2326925080125	85.6198421733096	97.9542435149347	86.6336386788523	98.3308179368468	59.2812405169629	101.775290560028	100.325867403771	81.9737069331782	73.0572045860969	119.535737827482
+DMRT1C	43.1021718487955	18.927000710451	25.253224053384	45.0656175975768	29.011176931218	18.3937061988514	43.1276038134209	20.5627592490906	43.1370757358596	18.2343843151734	34.9509625535045	24.6354490953544	31.4228408332048	24.2861054435242	37.7191995268371	31.0740475724351	44.8147168520987	44.1063534453143	29.1131847103463	27.4329429419677	30.3776591777753	25.7984917672196	38.32507221091	31.1256474720353	18.1518100089024	44.6270635251843	37.8390896916784	29.2132778459338	13.9341482505238	26.4137500118019	27.7823172369664	29.7223996760226
+DMSAT6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.26130298972261	0	0	0	0	0
+DMTOM1_LTR	82.6124960435246	115.282640690929	96.6210311607738	143.083335872306	114.783352206123	76.3338807252334	125.978000612887	116.032712905583	88.4863092017633	123.496511952765	117.857896982748	120.713700567237	86.8749128918015	90.8480240665165	95.4073870384703	101.241251768256	81.9781405831073	168.4060767912	144.595484061386	134.55205347727	95.600280353587	108.837387142958	94.5895399247992	84.2223402184486	107.26069550715	130.09923603952	97.1203302086413	72.5620127140937	75.2444005528286	81.9737069331782	80.2600275734585	108.551372729822
+DNAREP1_DM	4118.053335387	4118.34329095132	3739.67309242722	3705.52040696075	3922.81566330817	4032.82008409817	4044.9152629219	4272.64761825747	3957.55017904887	3858.22995396056	4125.02639439617	4191.72166357456	3926.00670174865	3845.300028558	3861.78039861529	4071.70262062037	4178.69908598959	3898.73433333278	4051.58487218986	4513.37227926183	3859.74963670557	3881.0606052311	3862.67802261874	3833.03194015918	4023.10116379127	3796.32596326949	3839.40630071564	3785.47539055214	3834.67759854415	3963.88413970213	3853.51029823849	4015.10851275662
+DOC	226.286402206176	241.749418165306	259.120038112984	325.599087142492	204.339594037275	239.118180585068	259.900559822984	221.78404618662	231.170482789607	264.398572570014	246.282364039811	234.036766405867	271.715153087124	268.046645265564	291.769102222299	273.652096363703	237.190086753791	264.638120671886	266.870859844841	279.554751884814	305.563512905857	312.000509809812	247.074401700122	289.285429445976	291.25404241557	238.263135770052	244.692780006187	275.170230032667	291.688170044298	257.761767356549	227.403411458133	289.470327279525
+DOC2_DM	145.469829989685	170.343006394059	127.364086530111	187.022313029944	128.658262912358	160.025243930007	177.050163023518	165.970842510517	162.59359315824	113.550484144489	143.867915627216	151.50801193643	153.417399362118	175.399650425453	107.610657473623	113.269915344683	183.63103490616	227.214548051619	159.15207641656	181.579955663501	155.462138145085	177.364630899635	167.162549005033	162.951919118303	168.316783718913	161.111263234988	196.763266396728	157.37475484745	90.107492020054	138.444482820479	154.346206872036	136.335355035669
+DOC3_DM	1215.84043090144	1412.64250757094	1309.8737519864	1347.46196616755	1123.86776720501	1220.42240629379	1484.49752073565	1504.0189622192	1475.5092059394	1196.00984394524	1299.68811914078	1448.56440680684	1361.34836903855	1385.20749566768	1122.70088003409	890.121104655561	1587.09680168896	1623.91574048657	1608.01823550146	1520.56883735478	1362.52736017963	1385.86272962033	1467.76872297102	1229.4630751454	1720.29653948007	1468.91114179505	1449.23713519128	1213.76457630848	1022.76648158845	1143.9886212008	1416.89817908529	1147.54308314383
+DOC4_DM	0	0	2.19593252638122	5.6332021996971	8.82948863124026	3.67874123977028	4.53974776983378	0	3.31823659506613	2.4865069520691	3.25125233055856	7.39063472860633	3.69680480390645	0.899485386797193	4.43755288551025	3.00716589410662	6.55825124664859	0	0	2.61266123256835	4.46730282026107	5.64342007407929	0	0	2.47524681939578	1.51278181441303	2.52260597944523	1.88472760296347	1.85788643340317	3.64327586369681	2.05794942496048	1.93841737017539
+DOC5_DM	23.3470097514309	39.5746378491249	15.3715276846686	33.7992131981826	21.4430438187263	15.6346502690237	5.67468471229223	19.0939907312984	14.3790252452865	10.7748634589661	17.8818878180721	16.0130419119804	20.3324264214855	14.3917661887551	13.3126586565307	16.038218101902	25.1399631121529	28.0676794652	7.76351592275901	15.6759673954101	17.8692112810443	12.8992458836098	18.7548225712964	31.1256474720353	14.8514809163747	22.6917272161954	23.9647568047297	10.3660018162991	26.0104100676444	11.8406465570146	20.5794942496048	16.1534780847949
+DOC6_DM	16.1633144432983	12.0444549975598	17.5674602110498	10.1397639594548	11.3521996687375	11.9559090292534	15.8891171944182	5.87507407116875	11.0607886502204	9.94602780827641	17.8818878180721	14.7812694572127	10.1662132107427	23.386620056727	12.2032704351532	23.0549385214841	5.46520937220715	13.3655616500952	7.76351592275901	6.53165308142088	11.6149873326788	20.9612745608659	7.33884361485511	9.15460219765745	10.726069550715	6.05112725765211	15.1356358766714	11.3083656177808	11.147318600419	10.0190086251662	6.17384827488143	7.10753035730976
+FB4_DM	523.511795580161	341.54633100223	441.382437802626	375.171266499827	445.258498118259	430.412725053123	575.413029826432	517.00651826285	453.492334659037	470.77864959175	349.509625535045	296.857161599021	484.281429311745	424.557102568275	392.723430367657	447.065329590518	498.427094745292	319.436923437276	382.353159195881	363.159911327001	477.107941203883	594.977716381502	431.360919139817	388.155133180676	349.834883807937	259.442081171834	412.446077639295	461.758262726051	478.405756601317	404.403620870346	330.300882706156	409.652204230399
+FROGGER_I-int	9.87758104868229	8.60318214111411	5.48983131595305	10.1397639594548	5.04542207499443	10.1165384093683	9.07949553966757	4.40630555337656	7.74255205515429	14.9190417124146	6.50250466111711	9.85417963814177	3.69680480390645	4.49742693398597	7.76571754964293	10.0238863136887	20.7677956143872	5.34622466003809	7.76351592275901	10.4506449302734	3.57384225620886	6.4496229418049	8.15427068317234	9.15460219765745	11.551151823847	0.756390907206514	2.52260597944523	7.53891041185389	6.50260251691111	10.0190086251662	8.2317976998419	5.81525211052617
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+FW2_DM	88.8982294381406	79.1492756982498	96.6210311607738	90.1312351951536	69.3745535311735	121.398460912419	71.5010273748821	32.3129073914281	48.6674700609698	67.9645233565554	59.3353550326937	44.343808371638	38.8164504410177	57.5670647550204	62.1257403971434	72.171981458559	75.4198893364587	76.1837014055428	71.8125222855208	54.8658858839354	55.3945549712373	66.1086351535002	41.586780484179	56.7585336254762	58.5808413923668	62.0240543909342	61.8038464964081	67.850193706685	64.0970819524095	74.6871552057846	51.4487356240119	69.1368862029222
+FW3_DM	10.7755429621989	19.7873189245625	20.8613590006216	15.7729661591519	8.82948863124026	20.2330768187366	14.7541802519598	8.81261110675312	11.0607886502204	10.7748634589661	5.68969157847748	19.7083592762835	16.635621617579	6.29639770758035	15.5314350992859	17.0406067332709	13.1165024932972	6.68278082504762	14.5565923551731	9.14431431398924	19.6561324091487	11.2868401481586	8.96969775148958	10.9855226371889	16.5016454626385	14.3714272369238	23.9647568047297	6.59654661037216	12.0762618171206	22.7704741481051	11.3187218372826	13.5689215912277
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+G5A_DM	104.163581967922	106.679458549815	125.16815400373	94.6377969549113	109.737930131129	105.763810643396	94.199766224051	101.345027727661	152.638883373042	83.7124007196598	118.670710065387	150.276239481662	80.4055044849652	108.83773180246	95.4073870384703	74.1767587212967	131.165024932972	90.8858192206476	106.748343937936	112.344433000439	96.4937409176392	108.837387142958	126.391195589171	86.9687208777458	122.112176423525	119.509763338629	102.165542167532	127.219113200034	85.462775936546	102.922543149435	100.839521823063	93.6901728918105
+G5_DM	59.2654862920937	53.3397292749075	41.7227180012432	58.5853028768499	58.022353862436	64.37797169598	43.1276038134209	38.1879814625969	45.3492334659037	52.2166459934511	60.1481681153333	61.5886227383861	53.6036696566435	68.3608893965867	74.3290108322966	58.1385406193947	54.6520937220715	61.4815835904381	47.5515350268989	71.8481838956297	44.6730282026107	33.0543175767501	52.187332372303	50.350312087116	63.5313350311583	47.6526271540104	52.9747255683498	63.1383746992764	51.0918769185873	49.184224159907	54.5356597614526	60.0909384754371
+G6_DM	439.103375709604	437.901970982708	426.010910117957	389.817592219039	411.201899112046	371.552865216799	385.878560435872	497.912527531551	545.296880455867	452.544265276577	413.721859063576	487.781892088018	411.269534434592	506.41027276682	346.129125069799	332.793025614466	551.986146592923	497.198893383543	475.515350268989	513.387932199681	395.803029875131	370.853319153782	428.914637934865	323.157457577308	528.877737077565	481.82100789055	423.797804546798	350.559334151206	243.383122775816	397.117069142952	372.488845917846	307.562222734495
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+GTWIN_I-int	61.0614101191269	62.803229630133	41.7227180012432	49.5721793573345	59.2837093811846	89.2094750644294	39.7227929860456	54.3444351583109	24.3337350304849	72.9375372606937	34.9509625535045	34.4896287334962	63.7698828673862	40.4768424058737	42.1567524123473	44.1050997802305	53.5590518476301	32.0773479602286	31.054063691036	39.1899184885253	50.9272521509762	50.7907806667136	54.6336135772547	29.2947270325039	36.3036200178048	39.3323271747387	27.7486657738975	34.8674606548243	44.5892744016762	58.292413819149	41.1589884992095	38.122208280116
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+QUASIMODO_LTR	23.3470097514309	19.7873189245625	20.8613590006216	27.0393705585461	29.011176931218	31.2693005380474	17.0240541368767	14.6876851779219	35.3945236807053	46.4147964386232	25.1972055618288	22.171904185819	23.1050300244153	31.4819885379018	14.4220468779083	44.1050997802305	17.4886699910629	30.740791795219	28.1427452200014	26.1266123256835	35.7384225620886	42.7287519894575	35.8787910059583	32.0411076918011	23.1023036476939	25.7172908450215	18.9195448458392	28.2709140444521	24.1525236342413	29.1462069095745	23.6664183870455	49.1065733777765
+R1-2_DM	5.38777148109943	12.0444549975598	4.39186505276244	1.12664043993942	2.52271103749722	10.1165384093683	4.53974776983378	2.93753703558437	5.53039432511021	10.7748634589661	1.62562616527928	7.39063472860633	2.77260360292984	0	11.0938822137756	14.0334408391642	3.27912562332429	16.0386739801143	6.79307643241413	0	3.57384225620886	13.7054487513354	1.63085413663447	12.8164430767204	6.60065818505541	7.56390907206514	1.26130298972261	9.42363801481737	4.64471608350794	2.73245689777261	10.2897471248024	0.646139123391797
+R1_DM	42.2042099352789	30.9714557080108	26.3511903165747	37.1791345180009	45.4087986749499	36.7874123977028	30.643297446378	54.3444351583109	43.1370757358596	29.8380834248292	38.2022148840631	41.8802634621025	32.3470420341814	37.7783862454821	92.0792223743376	48.114654305706	27.3260468610358	62.8181397554476	40.7584585944848	47.0279021862304	78.6245296365949	37.0853319153782	75.8347173535028	29.2947270325039	39.6039491103325	48.4090180612169	13.8743328869488	43.3487348681599	39.0156151014667	45.5409482962101	34.9851402243281	51.6911298713437
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+ROOA_I-int	460.654461634001	413.813060987589	492.986852172584	347.005255501341	467.962897455734	380.749718316224	474.40364194763	543.444351583109	525.38746088547	457.517279180715	436.480625377486	530.893928004888	456.555393282446	467.73240113454	391.614042146279	313.747641618458	619.754742808291	610.806167409352	478.426668740024	578.70446301389	366.318831261408	409.551056804611	484.363678580437	325.903838236605	465.346402046407	436.437553458159	454.069076300141	307.210599283046	272.180362493565	394.38461224518	450.690924066344	335.992344163734
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+TART-A	1400.82058508585	1430.70919006728	1363.67409888274	1065.80185618269	1064.58405782383	1419.07443324139	1392.56762839651	1323.36043453076	1497.63078323984	1423.93964788491	1325.69813778525	1338.93665833251	1161.7209096276	1322.24351859187	1039.49676343077	975.324138321915	1511.6769123525	1577.13627471124	1602.19559855939	1655.12089083205	1378.60965033257	1453.58377050928	1440.85962971655	1338.40284129752	1480.19759799868	1501.43595080493	1455.5436501399	1385.27478817815	1298.66261694882	1329.79569024934	1550.66489170772	1133.9741615526
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+TC1-2_DM	69.143067340776	52.4794110607961	63.6820432650554	54.0787411170922	32.7952434874638	57.940174526382	30.643297446378	24.9690648024672	55.3039432511021	66.3068520551761	43.8919064625405	34.4896287334962	47.1342612498072	37.7783862454821	51.0318581833678	63.1504837762391	59.0242612198373	58.808471260419	35.9062611427604	49.6405634187987	64.3291606117595	69.3334466244027	38.32507221091	58.5894540650077	47.8547718416517	44.6270635251843	46.6682106197367	54.6571004859407	58.5234226522	46.4517672621343	55.5646344739328	41.352903897075
+TC1_DM	116.735048757154	110.120731406261	118.580356424586	82.2447521155777	61.8064204186818	147.149649590811	136.192433095013	117.501481423375	94.0167035268736	98.6314424320744	100.788822247315	91.1511616528114	96.1169249015676	72.8583163305726	105.391881030868	96.229308611412	76.5129312109002	126.972835675905	110.630101899316	88.830481907324	102.747964866005	108.837387142958	127.206622657489	110.770686591655	91.5841323176438	106.651117916118	103.426845157254	111.198928574845	83.6048895031428	76.508793137633	113.187218372826	100.79770324912
+TIRANT_I-int	133.796325113969	62.803229630133	125.16815400373	59.7119433167893	104.692508056134	82.7716778948314	106.684072591094	110.157638834414	80.7437571466091	114.379319795179	61.7737942806126	46.8073532811734	81.3297056859418	69.2603747833839	78.7665637178069	70.1672041958212	113.676354941909	66.8278082504762	87.3395541310388	67.9291920467772	90.2395169692737	80.6202867725613	113.344362496096	97.9542435149347	70.9570754893457	77.1518725350644	76.9394823730795	129.103840802998	136.554652855133	128.425474195313	75.1151540110574	63.3216340923961
+TIRANT_LTR	3.59184765406629	0.860318214111411	9.8816963687155	2.25328087987884	17.6589772624805	8.27716778948314	2.26987388491689	5.87507407116875	7.74255205515429	10.7748634589661	4.0640654131982	2.46354490953544	9.24201200976612	9.89433925476913	8.87510577102049	12.0286635764265	6.55825124664859	4.00966849502857	3.8817579613795	5.22532246513671	8.04114507646993	12.8992458836098	10.600551888124	0.915460219765745	4.95049363879156	8.32029997927166	1.26130298972261	9.42363801481737	15.792034683927	15.4839224207114	5.14487356240119	7.75366948070156
+TLD2	0	1.72063642822282	2.19593252638122	0	0	3.67874123977028	0	0	0	0	0	0	0	0	0	0	1.09304187444143	0	0	0	0	1.61240573545123	0	0	0	0	0	0	3.71577286680635	0	2.05794942496048	0
+TOM_I-int	19.7551620973646	18.927000710451	26.3511903165747	12.3930448393336	34.0565990062124	33.1086711579326	15.8891171944182	19.0939907312984	19.9094195703968	11.6036991096558	6.50250466111711	24.6354490953544	13.8630180146492	18.8891931227411	6.65632932826537	26.0621044155907	20.7677956143872	21.3848986401524	19.4087898068975	13.0633061628418	16.0822901529399	25.7984917672196	18.7548225712964	10.9855226371889	25.5775504670897	24.960899937815	7.56781793833569	21.6743674340799	15.792034683927	19.1271982844083	19.5505195371245	20.0303128251457
+TRANSIB1	17.0612763568149	26.6698646374537	39.526785474862	12.3930448393336	21.4430438187263	18.3937061988514	29.5083605039196	30.8441388736359	29.8641293555951	33.9822616782777	13.0050093222342	13.5494970024449	27.7260360292984	28.7835323775102	17.750211542041	28.0668816783285	15.30258624218	12.0290054850857	20.3792292972424	24.8202817093994	16.0822901529399	27.4108975026708	24.462812049517	41.1957098894585	12.3762340969789	24.2045090306085	26.4873627841749	14.1354570222261	27.8682965010476	17.3055603525599	9.26077241232214	20.6764519485375
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+TRANSPAC_LTR	8.08165722164915	15.4857278540054	9.8816963687155	32.6725727582432	10.0908441499889	6.437797169598	17.0240541368767	5.87507407116875	9.95470978519838	21.5497269179322	14.6306354875135	17.2448143667481	23.1050300244153	9.89433925476913	16.6408233206634	32.076436203804	10.9304187444143	22.7214548051619	22.3201082779321	1.30633061628418	12.508447896731	23.3798831640428	24.462812049517	9.15460219765745	18.9768922820343	15.8842090513368	12.6130298972261	17.904912228153	25.0814668509429	20.0380172503325	10.2897471248024	27.1378431824555
+Transib-N1_DM	14.3673906162651	12.9047732116712	7.68576384233428	4.50656175975768	10.0908441499889	12.875594339196	10.214432482126	11.7501481423375	17.6972618403527	3.3153426027588	12.1921962395946	4.92708981907089	11.0904144117193	3.59794154718877	4.43755288551025	11.0262749450576	3.27912562332429	13.3655616500952	7.76351592275901	6.53165308142088	10.7215267686266	4.83721720635368	8.15427068317234	15.5628237360177	4.95049363879156	13.6150363297173	20.1808478355618	4.71181900740868	10.2183753837175	4.55409482962101	9.26077241232214	9.04594772748515
+Transib5	1.79592382703314	6.88254571289129	0	5.6332021996971	0	4.59842654971285	2.26987388491689	5.87507407116875	4.42431546008817	4.1441782534485	0	1.23177245476772	3.69680480390645	0.899485386797193	0	7.01672041958212	0	8.01933699005714	8.73395541310388	1.30633061628418	5.36076338431329	4.03101433862806	4.07713534158617	3.66184087906298	4.12541136565963	0.756390907206514	0	3.76945520592695	2.78682965010476	4.55409482962101	1.02897471248024	1.93841737017539
+XDMR	9.87758104868229	12.9047732116712	6.58779757914366	1.12664043993942	6.30677759374304	6.437797169598	11.3493694245845	11.7501481423375	14.3790252452865	4.1441782534485	10.5665700743153	0	2.77260360292984	8.99485386797193	7.76571754964293	3.00716589410662	9.83737686997288	10.6924493200762	5.82263694206925	15.6759673954101	8.93460564052215	4.03101433862806	8.15427068317234	17.3937441755492	11.551151823847	12.8586454225107	5.04521195889046	8.48127421333563	5.57365930020952	2.73245689777261	2.05794942496048	5.16911298713437
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+ZAM_I-int	35.0205146271463	32.6920921362336	35.1349204220995	40.5590558378191	22.7043993374749	33.1086711579326	35.1830452162118	11.7501481423375	32.0762870856392	34.8110973289674	33.3253363882252	51.7344431002443	44.3616576468774	26.0850762171186	32.1722584199493	39.0931566233861	31.6982143588015	41.4332411152952	43.6697770655194	54.8658858839354	28.5907380496709	29.0233032381221	37.5096451425928	25.6328861534409	39.6039491103325	33.2811999170866	23.9647568047297	34.8674606548243	37.1577286680635	48.2734051939827	33.9561655118478	35.5376517865488
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