Mercurial > repos > artbio > mutational_patterns
changeset 1:921c1f55481d draft
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit ca3b3ab85c8224821c76ebd56b1be2441a28f609"
| author | artbio |
|---|---|
| date | Sun, 13 Sep 2020 22:27:03 +0000 |
| parents | 924c527fb379 |
| children | aea952be68cb |
| files | mutational_patterns.xml test-data/output.pdf |
| diffstat | 2 files changed, 7 insertions(+), 6 deletions(-) [+] |
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--- a/mutational_patterns.xml Sun Sep 13 18:40:29 2020 +0000 +++ b/mutational_patterns.xml Sun Sep 13 22:27:03 2020 +0000 @@ -1,4 +1,4 @@ -<tool id="mutational_patterns" name="Analyse Mutational Patters/Signatures" version="2.0.0_galaxy_1"> +<tool id="mutational_patterns" name="Analyse Mutational Patters/Signatures" version="2.0.0_galaxy_2"> <description>from genomic variations in vcf files</description> <requirements> <requirement type="package" version="2.0.0=r40_0">bioconductor-mutationalpatterns</requirement> @@ -90,12 +90,13 @@ This tool returns a pdf file with the visualisation : -* the Cosine similarity of samples when decomposed over the 30 signatures of cosmic -* the absolute contribution of the n most contributing cosmic signatures in the samples mutational patterns (to be set by the user, between 2 and 30) -* the relative contribution of the n most contributing cosmic signatures in the samples mutational patterns (to be set by the user, between 2 and 30) -* a clustering of the samples with respect to the relative contribution of their cosmic signatures -* pie charts of the samples displaying for each sample the relative contribution of the n most contributing cosmic signatures in their mutational pattern +* the Cosine similarity of samples when decomposed over the 30 signatures of cosmic_ +* the absolute contribution of the n most contributing cosmic_ signatures in the samples mutational patterns (to be set by the user, between 2 and 30) +* the relative contribution of the n most contributing cosmic_ signatures in the samples mutational patterns (to be set by the user, between 2 and 30) +* a clustering of the samples with respect to the relative contribution of their cosmic_ signatures +* pie charts of the samples displaying for each sample the relative contribution of the n most contributing cosmic_ signatures in their mutational pattern +.. _cosmic: https://cancer.sanger.ac.uk/cosmic/signatures_v2.tt </help> <citations>