Mercurial > repos > artbio > sr_bowtie
changeset 4:3c9d01ebc56d draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/sr_bowtie commit a5600be04bcee6b6e5418ab689f05bb5b815fe31
author | artbio |
---|---|
date | Fri, 21 Sep 2018 09:33:28 -0400 |
parents | 61ab0d4bd187 |
children | 0281bb245635 |
files | sRbowtie.xml |
diffstat | 1 files changed, 13 insertions(+), 3 deletions(-) [+] |
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--- a/sRbowtie.xml Thu Feb 01 13:07:22 2018 -0500 +++ b/sRbowtie.xml Fri Sep 21 09:33:28 2018 -0400 @@ -1,4 +1,4 @@ -<tool id="bowtieForSmallRNA" name="sR_bowtie" version="2.0.3"> +<tool id="bowtieForSmallRNA" name="sR_bowtie" version="2.1.0"> <description>for small RNA short reads</description> <requirements> <requirement type="package" version="1.1.2=py27_0">bowtie</requirement> @@ -124,11 +124,21 @@ </conditional> </actions> </data> - <data format="fasta" label="Matched reads" name="aligned"> + <data format="fastqsanger" label="Matched reads" name="aligned"> <filter>additional_fasta == "al" or additional_fasta == "al_and_unal"</filter> + <actions> + <action type="format"> + <option type="from_param" name="input" param_attribute="ext" /> + </action> + </actions> </data> - <data format="fasta" label="Unmatched reads" name="unaligned"> + <data format="fastqsanger" label="Unmatched reads" name="unaligned"> <filter>additional_fasta == "unal" or additional_fasta == "al_and_unal"</filter> + <actions> + <action type="format"> + <option type="from_param" name="input" param_attribute="ext" /> + </action> + </actions> </data> </outputs> <tests>