Mercurial > repos > artbio > yac_clipper
changeset 6:acbf910cd2ae draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit a3e2a5c2c8d914a574ef35b0f1864ddbde70611b
| author | artbio |
|---|---|
| date | Mon, 28 Nov 2022 22:17:36 +0000 |
| parents | 6bfb7e333280 |
| children | 396bc2c718a1 |
| files | README.txt yac.py yac.xml |
| diffstat | 3 files changed, 6 insertions(+), 15 deletions(-) [+] |
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--- a/README.txt Wed Mar 17 22:09:32 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,11 +0,0 @@ -This tool clips adapter sequences from a fastq file and outputs either a -fasta or fastq file of clipped reads with renumbered fasta/fastq headers. - -Clipped sequences with Ns can be discarded. - -Min size and max size filter clipped reads on their size. - -Note that unclipped reads that satisfy the min and max size conditions are kept. - -Homepage: drosophile.org -Repositoy development: https://bitbucket.org/drosofff/gedtools/
--- a/yac.py Wed Mar 17 22:09:32 2021 +0000 +++ b/yac.py Mon Nov 28 22:17:36 2022 +0000 @@ -1,7 +1,5 @@ -#!/usr/bin/python +#!/usr/bin/python3 # yac = yet another clipper -# v 1.2.1 - 23-08-2014 - Support FastQ output -# v 1.1.0 - 23-08-2014 - argparse implementation # Christophe Antoniewski <drosofff@gmail.com> import argparse
--- a/yac.xml Wed Mar 17 22:09:32 2021 +0000 +++ b/yac.xml Mon Nov 28 22:17:36 2022 +0000 @@ -1,4 +1,4 @@ -<tool id="yac" name="Clip adapter" version="2.4.0"> +<tool id="yac" name="Clip adapter" version="2.5.0"> <description /> <requirements> <requirement type="package" version="3.7.6">python</requirement> @@ -149,6 +149,10 @@ ------- +yac_clipper clips 7nt long motives in 5' of adapter sequences. + +It also accepts 1 mismatch in the searched 7nt motif + **Inputs** 1. A fastq or fasta file of reads to be clipped